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  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Developing Crowdsourced Ontology Engineering Tasks: An iterative process</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Jonathan M. Mortensen</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Mark A. Musen</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Natalya F. Noy</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>Stanford Center for Biomedical Informatics Research Stanford University</institution>
          ,
          <addr-line>Stanford CA 94305</addr-line>
          ,
          <country country="US">USA</country>
        </aff>
      </contrib-group>
      <abstract>
        <p>It is increasingly evident that the realization of the Semantic Web will require not only computation, but also human contribution. Crowdsourcing is becoming a popular method to inject this human element. Researchers have shown how crowdsourcing can contribute to managing semantic data. One particular area that requires signi cant human curation is ontology engineering. Verifying large and complex ontologies is a challenging and expensive task. Recently, we have demonstrated that online, crowdsourced workers can assist with ontology veri cation. Speci cally, in our work we sought to answer the following driving questions: (1) Is crowdsourcing ontology veri cation feasible? (2) What is the optimal formulation of the veri cation task? (3) How does this crowdsourcing method perform in an application? In this work, we summarize the experiments we developed to answer these questions and the results of each experiment. Through iterative task design, we found that workers could reach an accuracy of 88% when verifying SNOMED CT. We then discuss the practical knowledge we have gained from these experiments. This work shows the potential that crowdsourcing has to o er other ontology engineering tasks and provides a template one might follow when developing such methods.</p>
      </abstract>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>-</title>
      <p>
        Research communities have begun using crowdsourcing to assist with managing
the massive scale of data we have today. Indeed, certain tasks are better solved by
humans than by computers. In the life sciences, Zooniverse, a platform wherein
citizen scientists contribute to large scale studies, asks users to perform tasks
such as classifying millions of galaxies or identifying cancer cells in an image [
        <xref ref-type="bibr" rid="ref8">8</xref>
        ].
In related work, Von Ahn and colleagues developed games with a purpose, a
type of crowdsourcing where participants play a game, and as a result help
complete some meaningful task. For example, in Fold.it, gamers assist with folding
a protein, a computationally challenging task [
        <xref ref-type="bibr" rid="ref4">4</xref>
        ]. Further demonstrating the
power of the crowd, Bernstein et al. developed a system that uses the crowd to
quickly and accurately edit documents [
        <xref ref-type="bibr" rid="ref1">1</xref>
        ]. With crowdsourcing's popularity
rising, many developer resources are now available, such as Amazon's Mechanical
Turk, Crowd ower, oDesk, Houdini, etc. Finally, as evidenced by this workshop,
CrowdSem, the Semantic Web community is beginning to leverage
crowdsourcing. Systems such as CrowdMap, OntoGame, and ZenCrowd demonstrate how
crowdsourcing can contribute to the Semantic Web [
        <xref ref-type="bibr" rid="ref10 ref11 ref2">11, 2, 10</xref>
        ]. Crowdsourcing
enables the completion of tasks at a massive scale that cannot be done
computationally or by a single human.
      </p>
      <p>One area amenable to crowdsourcing is ontology engineering. Ontologies are
complex, large, and traditionally require human curation, making their
development an ideal candidate task for crowdsourcing. In our previous work, we
developed a method for crowdsourcing ontology veri cation. Speci cally, we sought
to answer the following driving questions:
(1) Is crowdsourcing ontology veri cation feasible?
(2) What is the optimal formulation of the veri cation task?
(3) How does this crowdsourcing method perform in an application?
In this work, we brie y highlight each of the experiments we developed to answer
our questions, and, with their results in mind, then discuss how one might
approach designing crowdsourcing tasks for the Semantic Web. In previous work,
we have published papers that explore each driving question in depth. The main
contribution of this work is a uni ed framework that presents all of the
experiments. This framework will enable us to re ect on current work and to ask new
questions for crowdsourcing ontology engineering.
2</p>
    </sec>
    <sec id="sec-2">
      <title>Ontology Veri cation Task</title>
      <p>
        We have begun to reduce portions of ontology engineering into microtasks that
can be solved through crowdsourcing. We devised a microtask method of
ontology veri cation based on a study by Evermann and Fang [
        <xref ref-type="bibr" rid="ref3">3</xref>
        ] wherein participants
answer computer-generated questions about ontology axioms . A participant
veri es if a sentence about two concepts that are in a parent-child relationship is
correct or incorrect. For example, the following question is a hierarchy-veri cation
microtask for an ontology that contains classes Heart and Organ:
      </p>
      <p>Is every Heart an Organ?
A worker then answers the question with a binary response of \Yes" or \No."</p>
      <p>This task is particularly useful in verifying ontologies because the class
hierarchy is the main type of relationship found in many ontologies. For example, in
296 public ontologies in the BioPortal repository, 54% of these ontologies
contained only SubClassOf relationships between classes. In 68% of ontologies, the
SubClassOf relationships accounted for more than 80% of all relationships. Thus,
verifying how well the class hierarchy corresponds to the domain will enable the
veri cation of a large fraction of the relations in ontologies.
3</p>
    </sec>
    <sec id="sec-3">
      <title>Protocol &amp; Experimental Design</title>
      <p>We developed various experiments that use the hierarchy veri cation task to
answer our driving questions. Generally, each of these experiments follows the same
basic procedure. First, we selected the ontology and axioms to verify. Next, we
created a hierarchy-veri cation task formatted as HTML from these entities and
submitted the task to Amazon Mechanical Turk. Finally, we obtained worker
responses, removed spam, and compared the remaining responses to a gold
standard using some analysis metric. Thus, in each experiment we used a standard
set of basic components outlined in Table 1. Typically, we manipulated one of
these components in each experiment. Figure 1 presents an example task as it
appears to a worker on Amazon Mechanical Turk.
To answer the driving questions, we performed a series of experiments using the
basic protocol. We began with the most basic question about feasibility of the
method. Having shown that, we tested various parameters in order to optimize
the method. Finally, we used the optimal method in verifying SNOMED CT.
Table 2 summarizes these experiments and their parameters. In the following,
we describe the speci cs of each experiment and our conclusions for each.</p>
      <sec id="sec-3-1">
        <title>Is crowdsourcing ontology veri cation feasible? [7]</title>
        <p>In this rst driving question, we wished to understand if it were possible for
Amazon Mechanical Turk workers (turkers) to perform on par with other groups
also performing the hierarchy-veri cation task.
4</p>
      </sec>
      <sec id="sec-3-2">
        <title>Experiment 1: Students and the Crowd</title>
        <p>
          Methods We determined whether turkers could recapitulate results from a study
by Evermann and Fang [
          <xref ref-type="bibr" rid="ref3">3</xref>
          ]. In this study, after completing a training session, 32
students performed the hierarchy-veri cation task with 28 statements from the
Bunge-Wand-Weber ontology (BWW) and 28 statements from Suggested Upper
Merged Ontology (SUMO), where half of the statements were true, and half false
in each. As an incentive to perform well, students were o ered a reward for the
best performance.
        </p>
        <p>Knowing the results of that experiment, we asked turkers to verify the same
statements. As in the initial study, we required turkers to complete a 12 question
training quali cation test. We asked for 32 turkers to answer each 28 question
set and paid $0.10/set. Furthermore, we o ered a bonus for good performance.
After turkers completed the tasks, we removed spam responses from workers
who responded with more than 23 identical answers. Finally, we compared the
performance of the students with that of the turkers using a paired t -test
Results In both experiments, the average accuracy of student was 3{4% higher
than the accuracy of the turkers. However, the di erence was not statistically
signi cant.</p>
        <p>Conclusion Turkers recapitulated previous hierarchy-veri cation results and
performed on par with students in the hierarchy-veri cation task.</p>
      </sec>
      <sec id="sec-3-3">
        <title>Experiment 2: Verifying the Common Anatomy Reference Ontology (CARO)</title>
        <p>Methods Verifying a domain ontology was the second component in showing the
feasibility of our veri cation method. For this veri cation task, we used CARO, a
well curated biomedical ontology. We selected 14 parent-child relations from the
ontology as correct relations. Like with WordNet, we paired children with
parents that were not in the same hierarchy to simulate incorrect relations. We then
asked workers to verify these relations following the earlier experimental setup.
In this situation, we had no quali cation test. As a comparison, we asked
experts on the obo-anatomy and National Center for Biomedical Ontology mailing
lists to perform the same veri cation. Finally, we measured worker and expert
performance, and compared the groups using a t -test.</p>
        <p>Results With the proper task design of context and quali cations (addressed
later), turkers performed 5% less accurately than experts, but there was not a
statistically signi cant di erence.</p>
        <p>Conclusions Workers performed nearly as as well as experts in verifying a domain
ontology. These results are quite encouraging. In addition, the results of this
experiment led us to hypothesize that worker performance signi cantly depends
on the task formulation. We address this next.
4.2</p>
      </sec>
      <sec id="sec-3-4">
        <title>What is the optimal formulation of the hierarchy veri cation task? [5]</title>
        <p>With the feasibility of crowdsourcing ontology veri cation established, we
focused on formulating the task in an optimal fashion. There were four main
parameters that we hypothesized would a ect the method's performance: Ontology
Type (i.e., the domain of the ontology being veri ed), Question Formulation (i.e.,
How should we ask a worker to verify a relationship?), Worker Quali cation (i.e.,
How does the accuracy of a worker vary based on certain quali cation?), and
Context (i.e., What information should be provide to assist a worker in answering
the question?).</p>
      </sec>
      <sec id="sec-3-5">
        <title>Experiment 3: WordNet and Upper Ontologies</title>
        <p>Methods Having shown that turkers perform similarly to students and domain
experts, we then analyzed how turker performance varied based on ontology
selection. To do so, we compared worker performance in verifying BWW and
SUMO to verifying WordNet. We created a set of WordNet statements to verify
by extracting parent-child relationships in WordNet and also generating incorrect
statements from incorrectly paired concepts (i.e. pairing concepts in
parentchild relationships that are not actually hierarchically related). We then asked
workers to verify the 28 WordNet, SUMO and BWW statements following the
same setup as the rst experiment (including the training quali cation), paying
workers $0.10/set, giving a bonus, and removing spam.</p>
        <p>Results Echoing the rst experiment, workers performed only slightly better than
random on BWW and SUMO, respectively. However, workers had an average
accuracy of 89% verifying WordNet statements. There was a clear di erence
between worker performance on upper ontologies and WordNet.
Conclusion While workers struggle with verifying conceptually di cult
relationships, such as those contained in upper level ontologies, they perform reasonably
well in tasks related to common-sense knowledge.</p>
      </sec>
      <sec id="sec-3-6">
        <title>Experiment 4: Question Formulation</title>
        <p>Methods We repeated the task of verifying 28 WordNet statements but varied
the polarity and mood of the veri cation question we ask the workers. In this
case, we did not require quali cations as with the earlier experiments. Table 3
shows the 6 di erent question styles through example.</p>
        <p>Results Worker performance varied from 77% on negatively phrased statements
to 91% with the positive, indicative mood (i.e., a True/False statement asserting
the relationship). In addition, workers responded faster with positively phrased
questions.
Conclusion Generally for crowdsourcing, one should create tasks in the most
cognitively simple format as possible. In this situation, asking the veri cation as
simply as possible (i.e., Dog is a kind of Mammal. True or False?)</p>
      </sec>
      <sec id="sec-3-7">
        <title>Experiment 5: Worker Quali cation</title>
        <p>Methods Having determined the optimal method to ask the veri cation question,
we theorized that workers who could pass a domain-speci c quali cation test
would perform better than a random worker on tasks related to that domain. We
developed a 12 question high-school level biology quali cation test. For turkers to
access our tasks, they would have to pass this test. We assume that the ability to
pass this test serves as a reasonable predictor of biology domain knowledge. We
asked workers to complete the CARO veri cation (Experiment 3), but required
them to rst pass the quali cation task, answering at least 50% of it correctly.
Results With quali cations, turkers improved their accuracy to 67% (from
random without quali cations) when verifying CARO.</p>
        <p>Conclusion When crowdsourcing, some method to select experts in the domain
of the task is necessary to achieve reasonable performance. However, such low
accuracy was not satisfying to the authors.</p>
      </sec>
      <sec id="sec-3-8">
        <title>Experiment 6: Task Context</title>
        <p>Methods With the increases in performance with proper question formulation
and quali cation requirements, we next proposed that concept de nitions would
assist workers in verifying a relation. In this experiment, we used CARO because
the ontology has a complete set of de nitions. We repeated Experiment 3, with
quali cations and simply stated veri cation questions, varying whether users
and experts were shown de nitions.</p>
        <p>Results With de nitions, workers performed with an average accuracy of 82%.
Experts performed with an average accuracy of 86%. So, when providing workers
and experts with de nitions, there was no statistically signi cant di erence.
Conclusion In crowdsourcing, context is essential, especially for non-domain
experts. While workers might not have very speci c domain knowledge, with
proper context or training, they can complete the task. This experiment revealed
that in some situations, a properly designed microtask can indeed provide results
on par with experts.
4.3</p>
      </sec>
      <sec id="sec-3-9">
        <title>How does this crowdsourcing method perform on an application? [6]</title>
        <p>The previous experiments were all synthetic { turkers only found errors that
we introduced. With the optimal task formulation in hand, we shifted our focus
to a true ontology veri cation task of verifying a portion of SNOMED CT.
We selected SNOMED CT because it is a heavily studied, large and complex
ontology, making it an ideal candidate for our work.</p>
      </sec>
      <sec id="sec-3-10">
        <title>Experiment 7: Verifying SNOMED CT</title>
        <p>
          Methods In 2011, Alan Rector and colleagues identi ed entailed SubClass
axioms that were in error [
          <xref ref-type="bibr" rid="ref9">9</xref>
          ]. In our nal experiment, we evaluated whether our
method could recapitulate their ndings. To do so, we asked workers to perform
the hierarchy veri cation task on these 7 relations along with 7 related relations
we already knew were correct. We used the optimal task formulation we
determined in earlier experiments and provided de nitions from the Uni ed Medical
Language System. In addition, we posted the task with 4 di erent quali cation
tests: biology, medicine, ontology, and none. To note, instead of asking workers
to complete the task of verifying all 14 relations in one go, as with earlier
experiments, we instead broke up the task into smaller units, creating one task
per axiom and paid unquali ed workers and quali ed workers $0.02 and $0.03
per veri cation, respectively. We then compared worker's average performance
to their aggregate performance (i.e., when we combined all workers responses to
one nal response through majority voting [
          <xref ref-type="bibr" rid="ref6">6</xref>
          ]).
        </p>
        <p>Results The aggregate worker response was 88% accurate in di erentiating
correct versus incorrect SNOMED CT relations. On average, any single worker
performed 17% less accurately than the aggregate response. Furthermore, there
was no signi cant di erence in performance for tasks with di ering quali cation
tests.</p>
        <p>Conclusion Individually, workers did not perform well in identifying errors in
SNOMED CT. However, as a group, they perform quite well. The stark di erence
between average worker performance and aggregate performance reinforces the
fact that the power of the crowd lies in their combined response, not any worker
alone.</p>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>Discussion</title>
      <p>Each of the experiments we performed highlighted various lessons we learned
in developing a method for crowdsourcing ontology veri cation. A few lessons
are particularly useful for the Semantic Web community. First, many of our
experiments focused on changing small components of the task. Even so, through
this process we greatly improved crowd worker performance. It is clear that each
task will be unique, but in most cases, extensive controlled trials will assist
in identifying the best way to crowdsource a task. Following this strategy, we
veri ed a complex ontology with relatively high accuracy. In addition, our current
results only serve as a baseline { through additional iteration, we expect the
increases in accuracy to continue.</p>
      <p>Second, using the re ned tasks, we showed that crowd workers, in
aggregate, can perform on par with experts on domain speci c tasks when provided
with simple tasks and the proper context. The addition of context was the
single biggest factor at improving performance. In the Semantic Web, a trove of
structured data are available, all of which may provide such needed context (and
maybe other elements, such as quali cation tests). For example, when using the
crowd to classify instance-level data, the class hierarchy, de nitions, or other
instance examples may all assist the crowd in their task.</p>
      <p>
        Our results suggest that crowdsourcing might serve as method to improve
other ontology engineering tasks such as typing instances, adding de nitions,
creating ontology mappings and even ontology development itself. In fact,
Sarasua and colleagues used crowdsourcing to improve automated ontology mapping
methods [
        <xref ref-type="bibr" rid="ref10">10</xref>
        ]. ZenCrowd follows a similar paradigm, using crowdsourcing to
improve machine extracted links [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ]. Indeed, crowdsourcing can serve as a human
curated step in ontology engineering that acts in concert with automated
methods (e.g., terminology induction supplemented with the crowd).
5.1
      </p>
      <sec id="sec-4-1">
        <title>Future Work</title>
        <p>
          The results thus far serve only as a baseline for crowdsourcing an ontology
engineering task. We plan to focus research on other elements in the crowdsourcing
pipeline, include entity selection (e.g., selecting the axioms for veri cation that
will most likely be in error), generating context (e.g., how can we use the crowd to
also supply context for workers downstream), and optimizing performance (e.g.,
developing aggregation strategies that maximize worker performance while
minimizing task cost). We will also consider di erent incentives models including
reputation or altruism, like the successful Zooniverse platform [
          <xref ref-type="bibr" rid="ref8">8</xref>
          ]. Finally, we
will investigate how to integrate this method into a true ontology engineering
work ow with the Protege ontology development platform.
6
        </p>
      </sec>
    </sec>
    <sec id="sec-5">
      <title>Conclusion</title>
      <p>Crowdsourcing is now another tool for the Semantic Web researcher and
developer. In this work, we described various experiments we performed to re ne a
methodology to crowdsource ontology veri cation. In summary, we arrived at a
highly accurate method through iterative, controlled development of the
crowdsourcing task. In doing so, we gained valuable knowledge about method design
for crowdsourcing. For example, providing task context is key to enabling
accurate crowd workers. Finally, our results suggest that crowdsourcing can indeed
contribute to ontology engineering.</p>
    </sec>
    <sec id="sec-6">
      <title>Acknowledgements</title>
      <p>This work is supported in part by Grant GM086587 from the National Institute
of General Medical Sciences and by The National Center for Biomedical
Ontology, supported by grant HG004028 from the National Human Genome Research
Institute and the National Institutes of Health Common Fund. JMM is supported
by National Library of Medicine Informatics Training Grant LM007033.</p>
    </sec>
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