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  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Characterising citations in scholarly articles: an experiment</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Paolo Ciancarini</string-name>
          <email>ciancarini@cs.unibo.it</email>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Angelo Di Iorio</string-name>
          <email>diiorio@cs.unibo.it</email>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Andrea Giovanni Nuzzolese</string-name>
          <email>nuzzoles@cs.unibo.it</email>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Silvio Peroni</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Fabio Vitali</string-name>
          <email>fabio@cs.unibo.it</email>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>Department of Computer Science and Engineering, University of Bologna</institution>
          ,
          <country country="IT">Italy</country>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>STLab-ISTC, Consiglio Nazionale delle Ricerche</institution>
          ,
          <country country="IT">Italy</country>
        </aff>
      </contrib-group>
      <abstract>
        <p>This work presents some experiments in letting humans annotate citations according to CiTO, an OWL ontology for describing the function of citations. We introduce a comparison of the performance of different users, and show strengths and difficulties that emerged when using that particular model to characterise citations of scholarly articles.</p>
      </abstract>
      <kwd-group>
        <kwd>CiTO</kwd>
        <kwd>act of citing</kwd>
        <kwd>citation function</kwd>
        <kwd>ontology</kwd>
        <kwd>scholarly articles</kwd>
        <kwd>semantic publishing</kwd>
        <kwd>user testing</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>Introduction</title>
      <p>
        The mere existence of a citation might not be enough to capture the relevance
of the cited work. For instance, some simple questions arise: is it correct to
count negative and positive citations in the same way? Is it correct to give
selfcitations the same weight of others? Is it correct to give a survey the same weight
of a seminal paper, by only counting the number of times it has been cited? A
more effective characterisation of citations opens interesting perspectives that
go beyond the quantitative evaluation of research products, as highlighted in [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ].
      </p>
      <p>
        To this end, the first issue to address is to identify a formal model for
characterising the nature of citations in a precise way – i.e. a citation model. The
citation model has to capture the citation functions, i.e. “the author’s reasons for
citing a given paper” [
        <xref ref-type="bibr" rid="ref8">8</xref>
        ]. Even assuming that such a citation model exists and is
well established, the task of annotating citations with their citation functions is
very difficult from a cognitive point of view. First, the “citation function is hard
to annotate because it in principle requires interpretation of author intentions
(what could the author’s intention have been in choosing a certain citation?)”
[
        <xref ref-type="bibr" rid="ref7">7</xref>
        ]. Second, one has to create his/her own mental model of the citation model,
so as to associate a particular meaning to each of the various functions defined
by the citation model. Third, one has to map, by means of the mental model,
the personal interpretation of author’s intention emerging from a written text
containing a citation with the one of the functions of the citation model.
      </p>
      <p>
        Our work is positioned within the field of “Semantic Web and Cognition”.
In particular, the goal of this paper is to analyse weaknesses and strengths of
a particular citation model, studying how it has been used (and misused) by
the users for the annotation of citations. The model under investigation is CiTO
(Citation Typing Ontology)3 [
        <xref ref-type="bibr" rid="ref5">5</xref>
        ], an OWL ontology for describing the nature of
citations in scientific research articles and other scholarly works. We present the
results of a preliminary user testing session with five users to whom we asked to
assign CiTO properties to the citations in the Proceedings of Balisage 2011.
      </p>
      <p>The paper is then structured as follows. In Section 2 we introduce previous
works on classification of citations. In Section 3 we present our experimental
setting and results: we go into details of the analysis performed by the humans
and discuss the outcomes. Finally we conclude the paper sketching out some
future works in Section 4.
2</p>
    </sec>
    <sec id="sec-2">
      <title>Related works</title>
      <p>
        Teufel et al. [
        <xref ref-type="bibr" rid="ref7">7</xref>
        ] [
        <xref ref-type="bibr" rid="ref8">8</xref>
        ] study the function of citations – that they define as “author’s
reason for citing a given paper” – and provide a categorisation of possible
citation functions organised in twelve classes, in turn clustered in Negative, Neutral
and Positive rhetorical functions. Jorg [
        <xref ref-type="bibr" rid="ref3">3</xref>
        ] analysed the ACL Anthology
Networks4 and found one hundred fifty cue verbs, i.e. verbs usually used to carry
important information about the nature of citations: based on, outperform, focus
on, extend, etc. She maps cue verbs to classes of citation functions according to
the classification provided by Moravcsik et al. [
        <xref ref-type="bibr" rid="ref4">4</xref>
        ] and makes the bases to the
development of a formal citation ontology.
      </p>
      <p>
        These works actually represent some of the sources of inspiration of CiTO
(the Citation Typing Ontology) developed by Peroni et al. [
        <xref ref-type="bibr" rid="ref5">5</xref>
        ], which is the
ontology we used in our experiment. CiTO permits the motivations of an author when
referring to another document to be captured and described by using Semantic
Web technologies and languages such as RDF and OWL.
3
      </p>
    </sec>
    <sec id="sec-3">
      <title>Using CiTO to characterise citations</title>
      <p>In order to assess how CiTO is used to annotate scholarly articles, we compared
the classifications performed by humans on a set of citations. The role of CiTO
in such a process was obviously prominent. We in fact used the experiment to
study the effectiveness of CiTO, to measure the understandability of its entities,
and to identify some possible improvements, extensions and simplifications.</p>
      <p>Our goal was to answer to the following four research questions (RQs):
1. How many CiTO properties have been used by users during the test?
2. What are the most used CiTO properties?
3. What is the global inter-rater agreement among users?
4. What are the CiTO properties showing an acceptable positive agreement
between users?</p>
      <sec id="sec-3-1">
        <title>3 CiTO: http://purl.org/spar/cito.</title>
        <p>4 ACL Anthology Network: http://clair.eecs.umich.edu/aan/index.php.</p>
        <p>The test bed includes some scientific papers encoded in XML DocBook,
containing citations of different types. The papers are all written in English and
chosen among those published in the proceedings of the Balisage Conference Series
(devoted to XML and other kinds of markup). We automatically extracted
citation sentences, through an XSLT transform, from all the papers published in the
seventh volume of the proceedings, which are freely available online5 . The XSLT
transform is available at http://www.essepuntato.it/2013/citalo/xslt.</p>
        <p>
          We took into account only those papers for which the XSLT transform
retrieved at least one citation (i.e. 18 papers written by different authors). The
total number of citations retrieved was 377, for a mean of 20.94 citations per
paper. We then filtered all the citation sentences that contain verbs (extends,
discusses, etc.) and/or other grammatical structures (uses method in, uses data
from, etc.) that carry explicitly a particular citation function. We considered
that rule as a strict guideline as also suggested by Teufel et al. [
          <xref ref-type="bibr" rid="ref7">7</xref>
          ]. We obtained
104 citations out of 377, obtaining at least one citation for each of the 18
paper used (with a mean of 5.77 citations per paper). These citations are very
heterogeneous and provide us a significative sample for analysing human
classifications. Finally, we manually expanded each citation sentence (i.e. the sentence
containing the reference to a bibliographic entity) selecting a context window6 ,
that we think is useful to classify that citation.
3.1
        </p>
      </sec>
      <sec id="sec-3-2">
        <title>Results</title>
        <p>The test was carried on, through a web interface, by five users, all academic
but not necessarily expert in Computer Science (the main area of the
Balisage Conference). None of them was an expert user of CiTO. Each user
processed each citation sentence separately, with its full context window, and had
to select one CiTO property for that sentence. Users could also revise their
choices and perform the experiments off-line. There was no time constraint and
users could freely access the CiTO documentation. We used R7 to load the
data and elaborate the results. All the data collected are available online at
http://www.essepuntato.it/2013/aic2013/test.</p>
        <p>The experiments confirmed some of our hypotheses and highlighted some
unexpected issues too. The first point to notice is that our users have selected
34 different CiTO properties over 40, with an average of 22.4 properties per user
(RQ1). Moreover a few of these properties have been used many times, while
most of them have been selected in a small number of cases, as shown in Table 1
(RQ2). There were 6 properties not selected by any user: compiles, disputes,
parodies, plagiarizes, refutes, and repliesTo.</p>
        <p>
          These data show that there is a great variability in the choices of humans.
In fact only 3 citations (out of 104) have been classified with exactly the same
5 Proceedings of Balisage 2011: http://balisage.net/Proceedings/vol7/cover.html.
6 The context window [
          <xref ref-type="bibr" rid="ref6">6</xref>
          ] of a citation is a chain of sentences implicitly referring to
the citation itself, which usually starts from the citation sentence and involves few
more subsequent sentences where that citation is still implicit [
          <xref ref-type="bibr" rid="ref1">1</xref>
          ].
7 R project for statistical computing: http://www.r-pro ject.org/.
CiTO property by all 5 users, while for 23 citations the humans selected at most
two properties. These results are summarised in Table 2, together with the list of
selected properties. In that table, we indicate how many citations of the dataset
users agreed, and the number of properties selected by the users.
Considering all the 104 citations, the agreement among humans was very poor.
We measured the Fleiss’ k (that assesses the reliability of agreement between a
fixed number of raters classifying items) for the 5 raters over all 104 subjects
and obtained k = 0.16, meaning that there exists a positive agreement between
users but it is very low (RQ3). However there exists a core set of CiTO
properties whose meaning is clearer for the users and on which they tend to agree. In
fact, even considering the whole dataset whose k value was very low, we found
a moderate positive local agreement (i.e. 0.33 &lt;= k &lt;= 0.66) on some
properties (RQ4): citesAsDataSource (k = 0.5), citesAsPotentialSolution (k = 0.45),
citesAsRecommendedReading (k = 0.34), includesQuotationFrom (k = 0.49).
        </p>
        <p>The results on the core CiTO properties were also confirmed by a slightly
different analysis. We filtered only the 23 citations on which the users used at
most two properties, as mentioned earlier in table Table 2. The k value on that
subset of citations showed a moderate positive agreement between humans (k =
0.55, with 5 raters over 23 subjects). We had also moderate and high local
positive agreement (i.e. k &gt; 0.66) for 10 of the 15 properties used. The 5 properties
showing an high positive agreement are citesAsDataSource (k = 0.77),
citesAsPotentialSolution (k = 0.88), citesAsRecommendedReading (k = 0.7), credits (k =
0.74, that was not included in the core set mentioned above), and
includesQuotationFrom (k = 0.74); the properties showing a moderate positive agreement
are citesAsRelated (k = 0.6), citesForInformation (k = 0.4), critiques (k = 0.49),
obtainsBackgroundFrom (k = 0.49), and usesMethodIn (k = 0.49).
3.3</p>
      </sec>
      <sec id="sec-3-3">
        <title>Discussion</title>
        <p>
          One of our findings was that some of the properties were used only few times or
not used at all. This result can depend on a variety of factors. First, the authors
of the articles in our dataset, which are researchers on markup languages, use
a quite specific jargon so the citation windows resulted not easy to interpret
with respect to citations. Second, the positive or negative connotation of the
properties was difficult to appreciate. For instance, the fact that the
properties carrying negative judgements (corrects, derides, disagreesWith, etc.) are less
frequent than the others supports the findings of Teufel et al. [
          <xref ref-type="bibr" rid="ref7">7</xref>
          ] on this topic.
        </p>
        <p>
          Although we think the intended audience of the research articles one chooses
for such an experiment may bias the use of some properties, we also believe
that some properties are actually shared among different scholarly domains.
The property citesForInformation is a clear example. As expected, it was the
most used property, being it the most neutral of CiTO. This is in line with
the findings of Teufel et al. [
          <xref ref-type="bibr" rid="ref8">8</xref>
          ] on the analysis of citations within Linguistics
scholarly literature, where the neutral category Neut was used for the majority
of annotations by humans. Although its large adoption, citesForInformation had
a very low positive local agreement (k = 0.13). This is not surprising since the
property was used many times, often as neutral classification on citations that
were classified in a more precise way by other users.
        </p>
        <p>
          One of the reasons for having a low positive agreement in total (i.e. k = 0.16)
could be the high number of properties (40) defined in CiTO. To test this, we
mapped the 40 CiTO properties into 9 of the 12 categories identified by Teufel et
al. [
          <xref ref-type="bibr" rid="ref8">8</xref>
          ]8 and re-calculated the Fleiss’ k obtaining k = 0.19. Even if the agreement
is slightly better than the one we got initially, the number of available choices
did not impact too much. It seems to be only one of the factors to take into
account for that low agreement. Another important factor might have been the
8 The alignments of the forty CiTO properties with Teufel et al.’s classification is
available at http://www.essepuntato.it/2013/07/teufel.
flat organisation of CiTO properties. Since there is no hierarchical structure,
each user followed its own mental mapping and ended up selecting very different
values – probably because users’ mental models differed largely between users.
        </p>
        <p>We also asked humans informally what were the cognitive issues they
experienced during the test. Some of them highlighted that it was easy to get lost in
choosing the right property for a citation because of the large number of
possible choices. In addition, they also claimed that supporting the documentation
of CiTO with at least one canonical example of citation for each property could
be useful to simplify the choice.
4</p>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>Conclusions</title>
      <p>The main conclusion for this paper is that classifying citations is an extremely
difficult job also for humans, as demonstrated in our experiments on the
properties of CiTO. The human analysis we presented herein gave us important hints
on the understanding and adoption of CiTO, still showing some uncertainty and
great variability. The identified strengths and weaknesses will be used to
further improve the ontology, together with experiments on a larger set of users,
decreasing the number of possible choices (for instance by using only the CiTO
properties showing more agreement among humans).</p>
    </sec>
  </body>
  <back>
    <ref-list>
      <ref id="ref1">
        <mixed-citation>
          1.
          <string-name>
            <surname>Athar</surname>
            ,
            <given-names>A.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Teufel</surname>
            ,
            <given-names>S.</given-names>
          </string-name>
          (
          <year>2012</year>
          ).
          <article-title>Detection of implicit citations for sentiment detection</article-title>
          .
          <source>In Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics</source>
          :
          <fpage>18</fpage>
          -
          <lpage>26</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref2">
        <mixed-citation>
          2.
          <string-name>
            <surname>Ciancarini</surname>
            ,
            <given-names>P.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Di</surname>
            <given-names>Iorio</given-names>
          </string-name>
          ,
          <string-name>
            <given-names>A.</given-names>
            ,
            <surname>Nuzzolese</surname>
          </string-name>
          ,
          <string-name>
            <given-names>A. G.</given-names>
            ,
            <surname>Peroni</surname>
          </string-name>
          ,
          <string-name>
            <given-names>S.</given-names>
            , &amp;
            <surname>Vitali</surname>
          </string-name>
          ,
          <string-name>
            <surname>F.</surname>
          </string-name>
          (
          <year>2013</year>
          ).
          <article-title>Semantic Annotation of Scholarly Documents and Citations</article-title>
          . To appear
          <source>in Proceedings of 13th Conference of the Italian Association for Artificial Intelligence (AI*IA</source>
          <year>2013</year>
          ).
        </mixed-citation>
      </ref>
      <ref id="ref3">
        <mixed-citation>
          3.
          <string-name>
            <surname>Jorg</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          (
          <year>2008</year>
          ).
          <article-title>Towards the Nature of Citations</article-title>
          .
          <source>In Poster Proceedings of the 5th International Conference on Formal Ontology in Information Systems.</source>
        </mixed-citation>
      </ref>
      <ref id="ref4">
        <mixed-citation>
          4.
          <string-name>
            <surname>Moravcsik</surname>
            ,
            <given-names>M. J.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Murugesan</surname>
            ,
            <given-names>P.</given-names>
          </string-name>
          (
          <year>1975</year>
          ).
          <article-title>Some Results on the Function and Quality of Citations</article-title>
          .
          <source>In Social Studies of Science</source>
          ,
          <volume>5</volume>
          (
          <issue>1</issue>
          ):
          <fpage>86</fpage>
          -
          <lpage>92</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref5">
        <mixed-citation>
          5.
          <string-name>
            <surname>Peroni</surname>
            ,
            <given-names>S.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Shotton</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          (
          <year>2012</year>
          ).
          <article-title>FaBiO and CiTO: ontologies for describing bibliographic resources and citations</article-title>
          .
          <source>In Journal of Web Semantics: Science, Services and Agents on the World Wide Web</source>
          ,
          <volume>17</volume>
          (
          <year>December 2012</year>
          ):
          <fpage>33</fpage>
          -
          <lpage>43</lpage>
          . DOI:
          <volume>10</volume>
          .1016/j.websem.
          <year>2012</year>
          .
          <volume>08</volume>
          .001
        </mixed-citation>
      </ref>
      <ref id="ref6">
        <mixed-citation>
          6.
          <string-name>
            <surname>Qazvinian</surname>
            ,
            <given-names>V.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Radev</surname>
            ,
            <given-names>D. R.</given-names>
          </string-name>
          (
          <year>2010</year>
          ).
          <article-title>Identifying non-explicit citing sentences for citation-based summarization</article-title>
          .
          <source>In Proceedings of the 48th Annual Meeting of the Association for Computational Linguistics</source>
          :
          <fpage>555</fpage>
          -
          <lpage>564</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref7">
        <mixed-citation>
          7.
          <string-name>
            <surname>Teufel</surname>
            ,
            <given-names>S.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Siddharthan</surname>
            ,
            <given-names>A.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Tidhar</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          (
          <year>2006</year>
          ).
          <article-title>Automatic classification of citation function</article-title>
          .
          <source>In Proceedings of the 2006 Conference on Empirical Methods in Natural Language Processing:</source>
          <fpage>103</fpage>
          -
          <lpage>110</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref8">
        <mixed-citation>
          8.
          <string-name>
            <surname>Teufel</surname>
            ,
            <given-names>S.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Siddharthan</surname>
            ,
            <given-names>A.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Tidhar</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          (
          <year>2009</year>
          ).
          <article-title>An annotation scheme for citation function</article-title>
          .
          <source>In Proceedings of the 7th SIGdial Workshop on Discourse and Dialogue:</source>
          <fpage>80</fpage>
          -
          <lpage>87</lpage>
          .
        </mixed-citation>
      </ref>
    </ref-list>
  </back>
</article>