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<article xmlns:xlink="http://www.w3.org/1999/xlink">
  <front>
    <journal-meta />
    <article-meta>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Bo Yu</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Duminda Wijesekera</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Paulo Costa</string-name>
          <email>pcosta@gmu.edu</email>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>Department of Computer Science George Mason University</institution>
          ,
          <addr-line>Fairfax VA</addr-line>
          ,
          <country country="US">USA</country>
        </aff>
      </contrib-group>
      <fpage>72</fpage>
      <lpage>79</lpage>
      <abstract>
        <p>- Active duty military personnel, their families and veterans seek medical services from the Military Health Service, which partners with private care, or the Veterans Administration, respectively. Indeed, medical services for active duty personnel, who need medical services on deployment, is a readiness issue. Laws that govern the practice of medicine, licensing to practice medicine and the permission to treat a patient is based on local laws (state level) that are specific to medical sub-specialties. That provides a daunting challenge to patients who move frequently, such as active duty military and their families. As most medical providers are transforming their record keeping to Electronic Medical Record (EMR) system, it is desirable to obtain, verify and act according to the legally enforced medical consent using EMRs. We present an Ontology-based framework and a prototype system that provide end-to-end services using an open source EMR system. Providing an electronically verifiable, but compliant with locally mandated laws in one universal system can be beneficial to VA and other DoD EMR systems.</p>
      </abstract>
      <kwd-group>
        <kwd>informed medical consent</kwd>
        <kwd>medical consent law</kwd>
        <kwd>workflow management system</kwd>
        <kwd>ontology</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>I. INTRODUCTION</title>
      <p>Failure to obtain informed consent is listed as a top ten
reason for medical malpractice claims [1]. The improvement in
flexibility, automation and enforcement for electronic patient
informed consent management are especially beneficial to
patients who relocate, such as active duty military and their
families. This mobility entails their medical treatment be
subject to local regulations. Given that EMRs services can be
centralized, cloud based or being offered remotely, having a
consent management system that can provide a diverse
collection of consents for every treatment would benefit EMR
services generally, and especially the Military Health Service.
Although some VA hospitals have implemented electronic
consent process, iMedConsent [2], they do not provide
enforcement mechanism and is considered mostly educational
for the patients. The system we prototype can accommodate
(i.e. obtain and enforce though out long chains of treatment
processes), can be deployed from one location but cover
multiple regions (such as states, countries) and be helpful for
the military, military dependants and as well as for other
mobile populace.</p>
      <p>Informed patient consent – either express or derived
-expresses the patient’s  wishes, and consists of an agreement
between the care providers and patient, including choice
between potential treatment regimes or terminating treatment.</p>
      <p>Part of the process of obtaining consent involves the caregiver
providing a risk/benefit analysis and explaining alternative
treatments in a way that the patient understands, and accurately
communicates thec are provider’s understanding in an unbiased 
way [3].</p>
      <p>State law specifies acceptable explanation. Further, consent
laws obligate the caregiver to attest that the patient and/or the
guardian have the capacity (including physical/mental capacity
and maturity) to provide consent. Over the years, federal, state,
and local governments and healthcare organizations have
developed laws, regulations, and standards for obtaining and
memorializing informed consent. However, consent laws and
regulations are complex and sometimes ambiguous, and
change often. Therefore EMR must take these changes as they
are mandated. We postulate that having a consent service that
is aware of the semantics of informed medical consent can
satisfy the evolving and diverse nature of mandated informed
treatment consents.</p>
      <p>As a substantiation of our postulate, we provide a semantic
web driven, medical workflow aware [4] control system to
obtain and enforce treatment consent. The medical personnel
that use our system do not see a difference between the
existing EMR system and our prototype. Some highlights of
our system are: A refined Workflow-based EMRs that allow
the medical staff to obtain consents dynamically--i.e., if
required by a procedure in a treatment workflow; and
evaluating these consents automatically as a care team goes
from one step to another in the treatment workflow [5].
Furthermore, our combined workflow based consent
management engine ensures that treatment workflow move
forward only if consents have been granted (including
breakthe-glass kind of emergency treatments). This enhancement
improves current practice of patient informed consent
management.</p>
      <p>Following this Introduction, Section 2 describes related
work; Section 3 explores ontology-based reasoning to derive
the informed treatment consent; Section 4 shows architecture
of our consent-based workflow control in a Workflow-based
EMR system; and finally, Section 5 contains concluding
comments.</p>
    </sec>
    <sec id="sec-2">
      <title>II. RELATED WORKS</title>
      <p>A. Informed Consent in Current EMRs</p>
      <p>The American Medical Association considers the term
informed consent, first used by a California appeals court in
1957 [6], “an ethical obligation of the practice of medicine and 
a legal requirement per statute and case law in all 50 States”[ 7 ]
y. Medical informed consent falls mainly into two categories:
consent for medical information disclosure; and consent for
medical treatments. Herein we mainly address the latter, with a
focus on informed consent for procedure-oriented treatment
regimes.</p>
      <p>In the past decade, consent management has received
considerable attention from researchers and healthcare
organizations who proposed different ways to improve
electronic consent management system. For example,  “e
Consent: The Design and Implementation of Consumer
Consent Mechanisms in  an  Electronic  Environment”  [8 ]
provided guidelines on how to design an e-consent system.
Another relevant work is by Ruan C. &amp; Yeo S.S. [9], who used
the UML Model to design an e-consent system. They first
identify various parts necessary to specify the e-Consent rules
about patient record protection, and then used UML to model
the properties required by an e-consent system and to make the
associated patient record protection rules explicit and verifiable.
However, that work was theoretical; they neither designed nor
implemented a system that works with EMR systems.</p>
      <p>
        Rusello G. et al. proposed creating consent-based
workflows for healthcare management [
        <xref ref-type="bibr" rid="ref7">10</xref>
        ] where patients can
control disclosure of their medical data for inter-institutional
consults. This work does not address workflows for
procedureoriented treatment regimes, treating consent contents as black
boxes. Others have proposed e-consent management to be
integrated with EMR or EHR systems [
        <xref ref-type="bibr" rid="ref10 ref11 ref8 ref9">11-14</xref>
        ]. Win et al. in
their paper “Implementing patients consent in electronic health 
record  systems”  [
        <xref ref-type="bibr" rid="ref12">1 5</xref>
        ] expressed patient consent using an
interface-based approach. However, those e-consent
approaches focus mainly on sharing medical data, privacy, and
security aspects [
        <xref ref-type="bibr" rid="ref13 ref14 ref15">16-18</xref>
        ], but not the complicated nature of
treatments.
      </p>
      <p>Many healthcare organizations attempted to have electronic
consent management in their EMRs. Veterans Administration
Medical  Centers  use  iMedConsent™  [ 2] that supports
electronic access, completion, signing, and storage of informed
consent forms and advance directives. iMedConsent has two
parts: software application and clinical content library. It
generates consents on each procedure without workflows.
Nonetheless, the system neither dynamically gains informed
consents at the point of providing treatments nor enforces
consents on medical procedures.</p>
      <sec id="sec-2-1">
        <title>B. Ontologies in the Healthcare Domain</title>
        <p>
          Ontologies have been used to represent actionable
knowledge in biomedicine [
          <xref ref-type="bibr" rid="ref16 ref17 ref18 ref19 ref20">19–23</xref>
          ], decision support [
          <xref ref-type="bibr" rid="ref21">24</xref>
          ],
information integration, etc. Some examples are: BioPAX, an
ontology for the exchange and interoperability of biological
pathway (cellular processes) data [
          <xref ref-type="bibr" rid="ref22">25</xref>
          ]; CCO and GexKB,
Application Ontologies (APO) that integrate diverse types of
knowledge with the Cell Cycle Ontology (CCO) and the Gene
Expression Knowledge Base (GexKB) [
          <xref ref-type="bibr" rid="ref23">26</xref>
          ]; Disease Ontology,
designed to facilitate the mapping of diseases and associated
conditions to particular medical codes [
          <xref ref-type="bibr" rid="ref24">27</xref>
          ]; Linkbase, a formal
        </p>
        <p>
          Identify applicable sponsor/s here. If no sponsors, delete this text box
(sponsors).
representation of the biomedical domain, founded upon Basic
Formal Ontology [
          <xref ref-type="bibr" rid="ref25">28</xref>
          ]; NCBO Bioportal, biological and
biomedical ontologies and associated tools to search, browse
and visualize [
          <xref ref-type="bibr" rid="ref26">29</xref>
          ]; NIFSTD Ontologies from the Neuroscience
Information Framework: a modular set of ontologies for the
neuroscience domain [
          <xref ref-type="bibr" rid="ref27">30</xref>
          ]; SNOMED
CT (Systematized Nomenclature of Medicine
-Clinical Terms) [
          <xref ref-type="bibr" rid="ref28">31</xref>
          ]; OBO Foundry, a suite of interoperable
reference ontologies in biology and biomedicine [
          <xref ref-type="bibr" rid="ref29">32</xref>
          ];
OBOEdit, an ontology browser for most of the Open Biological and
Biomedical Ontologies [
          <xref ref-type="bibr" rid="ref30">33</xref>
          ]; PRO, the Protein Ontology of the
Protein Information Resource from Georgetown University
[
          <xref ref-type="bibr" rid="ref31">34</xref>
          ], and so on. Yet, no works have efficiently leveraged a
technique for informed treatment consent in EMRs. In this
paper, we provide a methodology to address this gap.
        </p>
        <p>III. USING ONTOLOGY-BASED REASONING TO DERIEVE</p>
        <p>INFORMED TREATMENT CONSENTS
A. Entities of Medical Treatment Consent Ontology</p>
        <p>To create our ontology for medical treatment consents, we
studied several medical treatments in actual medical facilities,
obtained their consent forms and studied state law governing
medical consents. We combined information obtained from
interviews with the various paper-based documents used to
record events and data that are associated with the workflows.
We found there are common entities used in the informed
treatment consents, such as patients (may or may not be an
Informed consent giver), treatments (usually, consisting of
several treatment procedures – so called tasks in the treatment
workflow specifications), treatment performance locations
(some treatments may be not be permitted in some states) and
informed consents (where some procedures within a treatment
regime may not require consent). Based on our observations,
we created the following classes, attributes and rules on the
ontologies.</p>
      </sec>
      <sec id="sec-2-2">
        <title>B. Classes, Propertities Created in Ontology</title>
        <p>Classes
1. Patient: (one requiring medical assistance) with
attributes such as age, name and active status used to evaluate
maturity.</p>
        <p>2. Treatment: Methods used to manage
ameliorate, or prevent a disease, disorder, or injury. Each
Treatment has a name (such as eye surgery, dialysis etc.).</p>
        <p>3. Procedures: generally, every treatment consisted of a
set of predefined procedures. Each procedure has a procedure’s 
name.</p>
        <p>4. Consent: legal documents expressing the willingness
for the patient to be subjected to treatments and encompassing
procedures (referred to as TreatmentConsent) or providing the
authority share medical information (SharingConsent).</p>
        <p>5. TreatmentConsent: A subclass of Consent, modeling
the agreement to receive treatment. Its nature is determined by
state law, federal law or medical sub-discipline. Thus, the
attributes are the state, treatment name, treatment type. An
example, anesthesiaConsent
1) MandatoryConsent: a sub-class of TreatmentConsent
with attributes active (or passive). An example is
anesthesiaConsent for Suegery.</p>
        <p>2) OptionalConsent: is a sub-class of TreatmentConsent,
but its omission does not affect performing the procedures. An
example is anesthesia consent for giving birth. Most states do
not mandate this consent.</p>
        <p>6. AdultPatient: is the patient’s maturity status.
Competent adult patients may give their own treatment
consents.</p>
        <p>7. MinorPatient: is a  patient’s maturity status. Without
exception, such as during an emergency, minor patients cannot
provide treatment consent.</p>
        <p>8. PerformInState: is a State in which the treatment is to
be performed. They associate with Treatment.</p>
        <p>Properties (express the relationship of two classes) in
Ontology</p>
        <p>TABLE 1 PROPERTIES TABLE
Property Name</p>
        <p>Domain
asksMandatoryConsentByPatient Patient class
asksOptionalConsentByPatient</p>
        <p>Patient class
has
isPatient
isState
needsMandatoryConsent
needsOptionalConsent
performedIn
requiresMandatoryConsent
requiresOptionalConsent</p>
        <p>Treatment class
AdultPatient
class or
MinorPatient
class
PerformInState
class
Procedures class
Procedures class
Treatment class
Procedures class
Procedures class</p>
        <p>Range
MandatoryConsent
OptionalConsent
class
Procedures class
Patient class
State class
MandatoryConsent
class
OptionalConsent
class
State class
Consent class
Consent class</p>
        <p>Table 1 shown relationship between two classes.
Properties may have a domain and a range specified. For
example, row1 in above table indicates:
asksMandatoryConsentByPatient: it links individuals
belonging to the class Patient to individuals belonging to
the class MandatoryConsent.</p>
        <p>A view of the entities of treatment consent ontology
developed in Protégé 4.3. shown in Fig.1.</p>
        <p>C. Rules for Enforcing Informed Treatment Consent</p>
        <p>
          We now show how to use the ontological syntax and create
rules that specify treatment consent. As stated, these rules
formalize contents taken from the many natural language
documents consisting of state laws and sub-disciplines
regulations that govern specific institutional practices [
          <xref ref-type="bibr" rid="ref32">35</xref>
          ].
These rules specify in the consent components:
        </p>
        <p>
          Rule (1) Information Disclosure Standard: Obligates the
care provider to disclose and discuss information relevant to
the proposed treatment, their risks and benefits and the
available alternatives with their risks and benefits [
          <xref ref-type="bibr" rid="ref33">36</xref>
          ]. These
come in two main standards: The normal person’s standard and
the professional standard. 25 states mandate the use of the
patient standard, while 23 have mandated the professional
standard. The laws in the remaining two states, Colorado and
Georgia, are not easily classifiable as one or the other [
          <xref ref-type="bibr" rid="ref34">37</xref>
          ].
Nonetheless, the scope of required information to be disclosed
is still being debated. Two states, Minnesota and New Mexico,
require the care provider to explain using both these standards.
        </p>
        <p>
          Rule (2) Decisional Capability: Evaluation of patient’s
competence to understand the information and providing
rational and voluntary decisions about the healthcare
treatment. In [
          <xref ref-type="bibr" rid="ref35">38</xref>
          ], authors described four psycho-legal
standards, communicating a choice, factual understanding,
appreciation of the situation, and rational manipulation of
information, all used  to  evaluate  a  patient’s  competence  in 
giving consent. However, to date this lacks a widely accepted
standard. Hence, we do not codify this aspect.
        </p>
        <p>Rule (3) Competency: Validation  of  patient’s  maturity  to 
grant informed consent. For the informed treatment consents,
an essential component of the conception of autonomy is
allowing competent adult persons and emancipated children to
make their own health care decisions. Our examinations have
led to categorizing the consents as follows:
1. Informed consent giver (governed by Rule (3)
competence): the person with the legal right to make
health care decisions, such as parents or legal
guardians of minors, healthcare proxies, healthcare
providers or third parties.
2.
3.</p>
        <p>Treatment information (governed by Rule (1)
information or disclosure): at a minimum, includes
treatment name, procedures for this treatment,
treatment preformed location.</p>
        <p>Patient’s decision of the treatment (governed by Rule
(2) - decisional capability): includes the decision
(deny or accept) by providing all required conditions
such  as  patient’s  and other attributes such as
signatures, date, etc.</p>
        <p>Consequently, formalization of informed consent should
base its consents on all the above-mentioned attributes.
Assuming that consent rules and patient information is
available in an EMR, we show how to generate the consent
decisions. Auto-generation of the appropriate forms to be
signed by the consent giver will be described elsewhere.</p>
        <p>
          The following example shows the complicated nature of
decisions made by our consent service. Most states set the age
at 18 years, but Alabama allows health care consent to be made
by minors 19 years of age and older [
          <xref ref-type="bibr" rid="ref36">39</xref>
          ]. So, can an 18
yearold resident of Virginia requiring dialysis treatment during a
visit to Alabama give consent for the treatment? Answering
this question will determine the adult status of the VA resident,
but that too depends on the treatment sought as described
below.
        </p>
        <p>Depending on the treatment type, the age of the minors
who may consent may differ.</p>
        <p>Example: In CA, for General Medical Treatments, Cal. Fam.</p>
        <p>Code § 6500, states a minor 18 years of age or older may
give his/her own treatment consent. However, for
Pregnancy (not include sterilization and abortion), CAL.
FAM. CODE § 6925 (2012) states that a minor may
consent to medical care related to the prevention or
treatment of pregnancy, but this law does not authorize a
minor: (1) To be sterilized without the consent of the
minor’s parent or guardian. (2) To receive an abortion
without the consent of a parent or guardian other than as
provided in Section 123450 of the Health and Safety Code.
Even if the patients are minors, for certain treatment with
some minor active status such minors are allowed to give
their own treatment consent.</p>
        <p>Example: (1) Cal. Fam. Code § 7050 provides that an
emancipated minor may consent for medical, dental, or
psychiatric care, without parental consent, knowledge, or
liability; (2) Cal. Fam. Code § 6922 provides that a minor, 15
years of age or older, is living separate and apart from the
minor's parents or guardian, whether with or without the
consent of a parent or guardian and regardless of the duration
of the separate residence; and the minor is managing the
minor's own financial affairs, regardless of the source of the
minor's income can give consent for medical treatments.</p>
        <p>Some consent rules are not found in specific provision
explicitly, but can be retrieved from combining laws.
Example: Cal. Fam. Code § 7002 provides a minor who has
married is emancipated; according to another rule (Cal. Fam.
Code § 7050 provides that an emancipated minor may consent
for medical, dental, or psychiatric care, without parental
consent, knowledge, or liability). The combination implies a
married minor may consent for medical, dental, or psychiatric
care, without parental consent, knowledge, or liability.</p>
        <p>We create patient maturity evaluation rules for each state
based on its consent laws. Table 2 shows a part of the summary
of 50 states’ patient maturity evaluation rules.</p>
        <p>TABLE 2 PATIENT MATURITY EVALUATION RULES (50 STATES)
State
D. Deriving Informed Treatment Consents</p>
        <p>We use the patient maturity rules of California (CA) as an
example to explain Semantic Web Rule Language (SWRL)
rules:</p>
        <p>For General Treatment (we consider eye surgery belongs
to general treatment)
1.
2.
3.
4.</p>
        <p>Minor is an emancipation minor may consent for
medical, dental, or psychiatric care, without parental
consent, knowledge, or liability. (Cal. Fam. Code §
7050);
Minor is 15 years of age or older, who is living
separate and apart from the minor's parents or
guardian and managing the minor's own financial
affairs (Cal. Fam. Code § 6922)is an emancipation
minor;
Married Minor is an emancipation minor (Cal. Fam.
Code § 7002);
Minor is 16 years of age or older, who serve in the
armed forces of the United States or has court
order(Cal. Fam. Code § 6950);
For Pregnancy Treatment (exclude to be Sterilization and
to receive Abortion)
1.</p>
        <p>An un-emancipated minor may consent for medical
care related to the prevention or treatment of
pregnancy (Cal. Fam. Code § 6925);</p>
        <p>Let S be a SWRL knowledge base, where {t, p, s} is a set
of OWL class names. In here, {t, p, s} refers to {Treatment,
Patient, and State} coordinately. performedIn is an OWL
property name to show the relationship between Treatment and
State, and {“eyesurgery”,  “CA”,  age,  fi,  ls,  m,  iem,  iaf,  hco, 
tpi} is a set of OWL constants and SWRL variables. In here,
age refers to patient’s age ;; fi refers to patient’s financial status;; 
ls refers to patient’s resident status ;; m refers to patient’s marital 
status; iem refers to patient maturity level; iaf refers to patient’s 
career status; hco refers to a legal issue related to patient, tpi
refers to patient seeking treatment which is an attribute of
Patient. Some SWRL rules have the form:
Example 1: (CA consent Laws for General Medical Treatment:
rule2 shown in Table 2)
Example 2: (CA consent Laws for General Medical Treatment:
rule1 ~ rule4 shown in Table1)
●● ● ● ● ● 
hasTreatmentName(?t, "eyesurgery"), patientRequiresTreatment(?p, "eyesurgery"),
hasAge(?p, ?age), patientMarried(?p, ?m), patientDivorced(?p, ?d),
patientIsArmedForce(?p, ?iaf), patientIsEmancipatedMinor(?p, ?iem), stringConcat(?v,
?m, ?d, ?iaf, ?iem), containsIgnoreCase(?v,"T"), patientTreatmentPerformedIn(?p, ?tpi),
hasStateName(?s, ?tpi), performedIn(?t, ?s), containsIgnoreCase("WY", ?tpi),
lessThan(?age, 18) -&gt; AdultPatient(?p)
WYOMING</p>
        <p>WY
1. No explicit law
Part (4) provided constrains. Part (5) implied the consequent
((5)) from the antecedent ((1) ~ (4)).</p>
        <p>Table 3 shows the part of summary of the syntax of
consent laws of patient’s maturity in 50 states.
patientRequiresTreatment(?p, "eyesurgery"),
hasAge(?p, ?age),
patientFinancialIndependent(?p, ?fi),
patientLivesSeparately(?p, ?ls),
hasTreatmentName(?t, "eyesurgery"),
patientTreatmentPerformedIn(?p, ?tpi),
hasStateName(?s, ?tpi), performedIn(?t, ?s),
containsIgnoreCase("AL || AK || CA || MA",
?tpi),
containsIgnoreCase("T", ?fi),
containsIgnoreCase("T", ?ls),
lessThan(?age, 16),
greaterThanOrEqual(?age, 15)
-&gt; AdultPatient(?p)
patientRequiresTreatment(?p, "eyesurgery"),
hasAge(?p, ?age),
patientFinancialIndependent(?p, ?fi),
patientLivesSeparately(?p, ?ls),
patientMarried(?p, ?m),
patientIsEmancipatedMinor(?p, ?iem),
patientIsArmedForce(?p, ?iaf),
patientHasCourtOrder(?p, ?hco),
patientIsEmancipatedMinor(?p, ?iem),
hasTreatmentName(?t, "eyesurgery"),
patientTreatmentPerformedIn(?p, ?tpi),
hasStateName(?s, ?tpi), performedIn(?t, ?s),
containsIgnoreCase("AL || AK || CA || MA",
?tpi),
stringConcat(?v, ?fi, ?ls),
containsIgnoreCase("FF-FT-TF", ?v),
containsIgnoreCase(?iem, "F"),
containsIgnoreCase("F", ?m),
containsIgnoreCase("T-F", ?iaf),
containsIgnoreCase("T-F", ?hco),
lessThan(?age, 16),
greaterThanOrEqual(?age, 15)
-&gt; MinorPatient(?p)</p>
        <p>In Part (1) we defined a set of OWL constants and SWRL
variables of a specific patient; and the information we can
retrieve from EMRs. Part (2) checked whether the treatment
that patients seek may be performed in the state where patient
does the treatment; and which treatment can be performed in
which states is known information. Part (3) established rules.</p>
        <p>E. Evaluation</p>
        <p>Here, we show consequences of our rule base that comply
with state consent laws and sub-disciplines regulations. The
scenario of a use case is a 15 year-old patient named Kate
seeking eye surgery in California. She is not married nor has
she done an emancipated minor evaluation. She also does not
have a court order of giving medical consent nor is serving in
the U.S. Armed Forces. However, she does not live with her
parents and manages her own financial affairs. In this situation,
what kind of informed consents should be obtained by her care
providers? May she provide these consents herself? We derive
that Kate is an adult patient according to CA consent laws of
patient’s maturity. Therefore, she is able to consent b y herself,
even if her age is under CA’s required maturity age.</p>
        <p>We now show how Pellet generates data properties of an
individual of class Patient, here Kate, and object properties of
this individual, reasoned with rules to infer the head of rule
(see example 1).</p>
        <p>Using Pellet, the informed treatment consents retrieved
easily and appropriately. The outcome of the proof of patient
maturity and explanation is shown in Fig. 2. In this
illustration, the left red box exposed that the outcome matches
our presuming result. For more details of how Pellet reasons,
see the following explanation provided by Protégé.
Explanation for:</p>
        <sec id="sec-2-2-1">
          <title>Kate has Age “15” ^^ int</title>
          <p>Kate patientRequiresTreatment “eyesurgery” ^^string
Kate patientTreatmentPerformedIn “CA” ^^string</p>
        </sec>
        <sec id="sec-2-2-2">
          <title>Kate patientFinancialIndependent “T” ^^string</title>
        </sec>
        <sec id="sec-2-2-3">
          <title>Kate patientLivesSeparately “T” ^^ string</title>
          <p>6. eyesurgery hasTreatmentName “eyesurgery” ^^string
7.</p>
          <p>CALIFORNIA hasStateName “CA” ^^ string
8. eyesurger performedIn CALIFORNIA
9. performedIn(?t, ?s), hasAge(?p, ?age),
hasStateName(?s, ?tpi), hasTreatmentName(?t,
"eyesurgery"), patientFinancialIndependent(?p, ?fi),
patientLivesSeparately(?p, ?ls),
patientRequiresTreatment(?p, "eyesurgery"),
patientTreatmentPerformedIn(?p, ?tpi),
containsIgnoreCase(?fi, "T"),
containsIgnoreCase(?ls, "T"),
containsIgnoreCase("CA", ?tpi),
greaterThanOrEqual(?age, 15), lessThan(?age, 18)</p>
          <p>In sub-section D above, we reviewed these rules, see
Example 1. The input facts of individual patient, Kate, are
shown in line 1 ~ line 6 from Kate’s data prosperities;; line 9 is 
the rule that used by Pellet to infer the new fact, in other
words Kate belongs to adult patient base on her active status
based on this particular rule.</p>
          <p>Our goals are proposing a novel approach, named
Workflow-based EMRs with a consent management
component to allow gaining informed treatment consents
required by a procedure in a treatment workflow dynamically,
and reasoning these consents automatically by using
ontologies to ensure those consents comply with consent laws
and regulations.</p>
          <p>IV. WORKFLOW-BASED EMRS WITH CONSENT MANAGEMENT</p>
          <p>To achieve our goals, we proposed a prototype, shown in
Fig. 1. We develop a consent management component
incepted Workflow-based EMRs which refers back to our
previous works.</p>
          <p>The existing EMRs lack a mechanism for dynamically
obtaining appropriate informed treatment consents and lack a
standard way for specifying, updating and checking
compliance with governmental consent laws and
subdiscipline regulations. Our goal here is to build a novel EMRs
by adopting a variety of technologies to address this gap.</p>
          <p>We developed a prototype consent management system on
a Workflow-based EMR system. In our system, consents are
issued electronically using the EMR interface and enforced
using the workflow runtime. Furthermore, those consents can
be used to control corresponding medical procedures
dynamically. In addition, we use ontology-based knowledge
representation and reasoning mechanisms to obtain required
informed consents based on each patient’s situation and ensure
compliance with governmental consent laws and
subdisciplines regulations.</p>
          <p>Our consent enforcement system, shown in Fig. 1 consists
of  (1)  User  Interface  (UI)  for  EMR  Operations;;  (2)  EMR’s 
Runtime System; (3) Workflow Management System -- a
runtime system that enforces medical treatment workflow and
checks for consents before enabling a workflow; (4) A
Consent Management System that ascertains which consents,
if any, are missing and must be issued; (5) A Consent Rule
Management System – a system connects to an ontology
application and the Consent Service to obtain the appropriate
informed consent automatically; and (6) Related Databases.
See, the high-level architecture shown in Fig. 3.</p>
          <p>
            Our implementation uses an open source EMR system,
OpenMRS [
            <xref ref-type="bibr" rid="ref37">40</xref>
            ], and a workflow system YAWL [
            <xref ref-type="bibr" rid="ref38">41</xref>
            ]. In our
implementation, the EMR user community interacts with the
EMR using the well-designed OpenMRS user interfaces. All
patient data is stored  in  OpenMRS’  databases.  Whenever  a 
treatment  procedure  (a  task  to  the  WfMS)  requires  a  patient’s 
informed consent to move to the next stage, WfMS will call the
consent service to retrieve or obtain related consents as a
prerequisite to proceeding with the treatment. Patient consents
are stored in the OpenMRS’ databases as part of their medical 
records. Consent Management Service is plugged in YAWL as
a custom service.
          </p>
          <p>
            As stated, we enforce medical workflows upon the
OpenMRS EMRs by using the YAWL workflow management
system. We did so because, first, YAWL workflow system has
been used to implement many workflows in industry and
academia [
            <xref ref-type="bibr" rid="ref39">42</xref>
            ]. Second, YAWL uses a domain independent
syntax to specify workflows, and provides an editor and a
runtime engine that can enforce workflows specified in YAWL
syntax for any applications. Therefore, our models can be
audited and verified by third-parties for workflow accuracy.
Third, YAWL is open source software. Last, many research
projects have recently used YAWL as a workflow-modeling
tool. Our medical workflow system is implemented as a
loadable module in OpenMRS and incorporates the knowledge
of the treatment processes as a YAWL specification. The
YAWL workflow engine uses these specifications to provide
the caregivers the ability to step through the tasks. In addition,
the workflow engine logs every incident into a database
creating the audit-able record of the work process provided by
the medical organizations. In another hand, the Consent
Management System acts as a customized workflow service in
YAWL.
          </p>
          <p>OpenMRS -&gt; YAWL: (Step 1) - When a caregiver
starts a medical treatment procedure in OpenMRS, a
“launch  case”  event  request  with  workflow 
specification id or name is sent to YAWL engine;
YAWL engine enables some work item(s); If the
enabled work item(s) does not request Consent
Service, Then (Step 6) - OpenMRS checks out the
enabled work item(s) and executes them.
2. YAWL enables other appropriate work items based on
control flow defined in the workflow specification,
sends notification to OpenMRS. Then the
interactions between YAWL and OpenMRS are
repeated. Otherwise,
3. YAWL -&gt; Consent Management Service (CMS):
(Step2) – If a task needs to check patient’s informed 
consent, the consent management service is triggered.
CMS -&gt; Ontology Service (OS) (Step 3): CMS uses
OWL  API  to  connect  to  the  OS  with  patient’s 
information and other required consent information.
An individual has be created and can be used Pellet
to reason appropriate outcomes.</p>
          <p>OS -&gt; CMS (Step 4): OS retunes the results reasoned
based on the SWRL rules to CMS.</p>
          <p>CMS -&gt; YAWL (Step 5): CMS passed results to
YAWL, if valid consents have been hold, obtaining
consent from patients medical recodes; otherwise,
asks OpenMRS (Step 6) retrieve appropriate consent
forms based on specific treatment task requirements.</p>
          <p>OpenMRS -&gt; CMS (Step 7): This is additional step</p>
          <p>existing only required CMS. Asking what kind of
consents should be issued.</p>
          <p>OpenMRS -&gt; CMS (Step 8): Same as the previous
step, this is additional step existing only required
CMS. CMS return the answers to OpenMRS. The
WfMS decides whether the treatment should continue
or be aborted based on the treatment specification
and on the patient’s treatment  decision.</p>
          <p>Access Control: The medical team as a whole provides
the required services to a patient who visits the medical center,
from acceptance of a patient to the end of the treatment at the
facility. Each team member plays a designated role in
providing care with a set of assigned duties that are
choreographed with each other, forming workflows. The team
together provides the care planned for the patient. We used a
role-based access control model to provide confidentiality.
Furthermore, enforced informed consent is an access control
with more complex rules.</p>
          <p>Accountability: To monitor quality of care and consistent
with continuous improvement, an EMR system must have
auditing capabilities. In our workflow-enforced EMR system
with consent management, the quality care team can review
both procedures and outcomes from workflow logs and
consent logs, which provide an audit trail that satisfies
accountability requirements.</p>
          <p>V. CONCLUSIONS</p>
          <p>Enforcing diverse consent laws in an EMR system is useful
for any and all EMR systems, but especially for EMR systems
that treat mobile populations, such as military personnel and
dependents. We have described an architecture and a prototype
system that is based on an open source EMR system, a generic
workflow engine and an Ontological rule system. Our system
enforces consents for medical treatments, which when
deployed will reduce medical malpractice, potential medical
treatment errors caused by missing informed consents, and
improve the patient-caregiver relationship. The processes of
obtaining the consent and including exception processes are
also be recorded in the workflow management system, thus
becoming available for quality of care audits and reviews.</p>
          <p>REFERENCES
E. Coiera, and R. Clark, “e-Consent: The design and Implementation of
consumer consent mechanisms in an electronic environment,” Journal of
the American Informatics Association (JAMIA) Vol. 11, No 2,
Mar/April 2004.</p>
          <p>VHA HANDBOOK 1004.05, Transmittal Sheet, (2005, March).
“IMEDCONSENT™”.  Available  at: 
http://www.va.gov/vhapublications/ViewPublication.asp?pub_ID=1857
Accessed August, 2013
Available
Fordham
at:</p>
        </sec>
      </sec>
    </sec>
  </body>
  <back>
    <ref-list>
      <ref id="ref1">
        <mixed-citation>
          <string-name>
            <given-names>P.S.</given-names>
            <surname>Appelbaum</surname>
          </string-name>
          , and G. Thomas, “
          <article-title>The MacArthur Treatment Competence Study. I: Mental illness and competence to consent to treatment”</article-title>
          ,
          <source>  Law and human behavior 19</source>
          .2;
          <year>1995</year>
          :
          <fpage>105</fpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref2">
        <mixed-citation>
          <string-name>
            <given-names>B.</given-names>
            <surname>Yu</surname>
          </string-name>
          , &amp; D. Wijesekera, “Building  Dialysis  Workflows  into  EMRs”,
          <source>  HCIST 2013 - International Conference on Health and Social Care Information Systems and Technologies.</source>
        </mixed-citation>
      </ref>
      <ref id="ref3">
        <mixed-citation>
          <string-name>
            <given-names>B.</given-names>
            <surname>Yu</surname>
          </string-name>
          ,,
          <string-name>
            <given-names>D.</given-names>
            <surname>Wijesekera</surname>
          </string-name>
          , &amp; C. Paulo, “
          <article-title>Consent-Based Workflow Control in EMRs”</article-title>
          ,
          <source> HCIST 2014 - International Conference on Health and Social Care Information Systems and Technologies.</source>
        </mixed-citation>
      </ref>
      <ref id="ref4">
        <mixed-citation>
          <string-name>
            <given-names>S. Salgo v.</given-names>
            <surname>Leland</surname>
          </string-name>
          , Jr. University Board of Trustees, 317 P.
          <year>2d</year>
          170-
          <fpage>181</fpage>
          (Cal. App. Ct.
          <year>1957</year>
          ).
        </mixed-citation>
      </ref>
      <ref id="ref5">
        <mixed-citation>
          <string-name>
            <given-names>American</given-names>
            <surname>Medical Association. Professional Resources (Legal Issues) Informed Consent</surname>
          </string-name>
          . Available at: http://www.amaassn.org/ama/pub/category/4608.html Accessed on March 15, 2008
          <string-name>
            <given-names>E.</given-names>
            <surname>Coiera</surname>
          </string-name>
          , R. Clark, “e-Consent:
          <article-title>The design and Implementation of consumer consent mechanisms in an electronic environment,” Journal of the American Informatics Association (JAMIA</article-title>
          ) Vol.
          <volume>11</volume>
          , No 2,
          <string-name>
            <surname>Mar</surname>
          </string-name>
          /April 2004
        </mixed-citation>
      </ref>
      <ref id="ref6">
        <mixed-citation>
          <string-name>
            <given-names>C.</given-names>
            <surname>Ruan</surname>
          </string-name>
          ,
          <string-name>
            <given-names>S. S.</given-names>
            <surname>Yeo</surname>
          </string-name>
          , “
          <article-title>Modeling of an Intelligent e-Consent System in a Healthcare Domain,”</article-title>
          <string-name>
            <surname>J. UCS</surname>
          </string-name>
          ,
          <volume>15</volume>
          (
          <issue>12</issue>
          ),
          <year>2009</year>
          .
          <fpage>2429</fpage>
          -
          <lpage>2444</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref7">
        <mixed-citation>
          [10]
          <string-name>
            <given-names>G.</given-names>
            <surname>Russello</surname>
          </string-name>
          ,
          <string-name>
            <given-names>C.</given-names>
            <surname>Dong</surname>
          </string-name>
          , and
          <string-name>
            <given-names>N.</given-names>
            <surname>Dulay</surname>
          </string-name>
          , “
          <article-title>Consent-based workflows for healthcare management,” In Policies for Distributed Systems</article-title>
          and Networks,
          <year>2008</year>
          .
          <article-title>POLICY 2008</article-title>
          . IEEE Workshop on (pp.
          <fpage>153</fpage>
          -
          <lpage>161</lpage>
          ). IEEE.
        </mixed-citation>
      </ref>
      <ref id="ref8">
        <mixed-citation>
          [11]
          <string-name>
            <surname>C.  M.  O'Keefe</surname>
            ,
            <given-names>P.</given-names>
          </string-name>
          <string-name>
            <surname>Greenfield</surname>
          </string-name>
          ,
          <article-title>and</article-title>
          <string-name>
            <given-names>A.</given-names>
            <surname>Goodchild</surname>
          </string-name>
          , 
          <article-title>“ A decentralized approach to electronic consent and health  information  access  control,”</article-title>
          <source>Journal of Research and Practice in Information Technology</source>
          , vol.
          <volume>37</volume>
          , no.
          <issue>2</issue>
          , pp.
          <fpage>161</fpage>
          -
          <lpage>178</lpage>
          ,
          <year>2005</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref9">
        <mixed-citation>
          [12]
          <string-name>
            <given-names>J.</given-names>
            <surname>Bergmann</surname>
          </string-name>
          ,
          <string-name>
            <given-names>O. J.</given-names>
            <surname>Bott</surname>
          </string-name>
          ,
          <string-name>
            <given-names>D. P.</given-names>
            <surname>Pretschner</surname>
          </string-name>
          , and
          <string-name>
            <given-names>R.</given-names>
            <surname>Haux</surname>
          </string-name>
          , “
          <article-title>An econsentbased shared EHR system architecture for integrated healthcare networks</article-title>
          ,”
          <source>International Journal of Medical Informatics</source>
          , vol.
          <volume>76</volume>
          , pp.
          <fpage>130</fpage>
          -
          <lpage>136</lpage>
          ,
          <year>2007</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref10">
        <mixed-citation>
          [13]
          <string-name>
            <surname>K. T. Win</surname>
            ,
            <given-names>J. A.</given-names>
          </string-name>
          <string-name>
            <surname>Fulcher</surname>
          </string-name>
          , “
          <article-title>Consent mechanisms for electronic health record systems:  A  simple  yet  unresolved  issue,”</article-title>
          <source>Journal of Medical Systems</source>
          , vol.
          <volume>31</volume>
          , pp.
          <fpage>91</fpage>
          -
          <lpage>96</lpage>
          ,
          <year>2007</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref11">
        <mixed-citation>
          [14]
          <string-name>
            <given-names>N. P.</given-names>
            <surname>Sheppard</surname>
          </string-name>
          ,
          <string-name>
            <given-names>R.</given-names>
            <surname>Safavi-Naini</surname>
          </string-name>
          , and
          <string-name>
            <given-names>M.</given-names>
            <surname>Jafari</surname>
          </string-name>
          , 
          <article-title>“ A digital rights management model for healthcare,” In Policies for Distributed Systems</article-title>
          and Networks,
          <year>2009</year>
          .
          <article-title>POLICY 2009</article-title>
          . IEEE International Symposium on (pp.
          <fpage>106</fpage>
          -
          <lpage>109</lpage>
          ). IEEE.
        </mixed-citation>
      </ref>
      <ref id="ref12">
        <mixed-citation>
          [15]
          <string-name>
            <surname>K.</surname>
          </string-name>
            Win,  H.  Song,  P.  Croll,  and  J.  Cooper, 
          <article-title>“Implementing  patients  consent in electronic  health  record  systems</article-title>
          ,”  Proceedings  of  CollECTeR, Melbourne, Australia,
          <year>2002</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref13">
        <mixed-citation>
          [16]
          <string-name>
            <given-names>J.</given-names>
            <surname>Grimson</surname>
          </string-name>
          ,
          <string-name>
            <given-names>G.</given-names>
            <surname>Stephens</surname>
          </string-name>
          ,
          <string-name>
            <given-names>B.</given-names>
            <surname>Jung</surname>
          </string-name>
          ,
          <string-name>
            <given-names>W.</given-names>
            <surname>Grimson</surname>
          </string-name>
          ,
          <string-name>
            <given-names>D.</given-names>
            <surname>Berry</surname>
          </string-name>
          , S. Pardon, “
          <article-title>Sharingh ealth -care records over the internet,” </article-title>
          <source>IEEE Internet Comput. 5  (3)</source>
          (
          <year>2001</year>
          )
          <fpage>49</fpage>
          -
          <lpage>58</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref14">
        <mixed-citation>
          [17]
          <string-name>
            <given-names>N.</given-names>
            <surname>Saranummi</surname>
          </string-name>
          , “PICNIC architecture,”
          <article-title>Studies in health technology and informatics</article-title>
          ,
          <volume>115</volume>
          ,
          <fpage>37</fpage>
          -
          <lpage>60</lpage>
          .
          <fpage>2</fpage>
        </mixed-citation>
      </ref>
      <ref id="ref15">
        <mixed-citation>
          [18]
          <article-title>Web service semantics in the eHealth Domain: The Artemis Project</article-title>
          , Available from: http://www.metu.edu.
          <source>tr/searchpage?cx=011418946324636299173%3Ajgqmx6nposk&amp;ie=utf8&amp;qa=ARTEMIS%20project%20 Access on January 10</source>
          ,
          <year>2014</year>
        </mixed-citation>
      </ref>
      <ref id="ref16">
        <mixed-citation>
          [19]
          <string-name>
            <surname>C.</surname>
          </string-name>
            Rosse,  JLV.  Mejino, 
          <article-title>“A  reference  ontology  for  biomedical  informatics:  the  Foundational  Model</article-title>
            of  Anatomy,”  J  Biomed  Inform 
          <year>2003</year>
          ;
          <volume>36</volume>
          :
          <fpage>478</fpage>
          -
          <lpage>500</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref17">
        <mixed-citation>
          [20] AC.  Yu,  “Methods  in  biomedical  ontology,”  J  Biomed  Inform 
          <year>2006</year>
          ;
          <volume>39</volume>
          :
          <fpage>252</fpage>
          -
          <lpage>66</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref18">
        <mixed-citation>
          [21]
          <string-name>
            <given-names>J.</given-names>
            <surname>Dang</surname>
          </string-name>
          ,
          <string-name>
            <given-names>A.</given-names>
            <surname>Hedayati</surname>
          </string-name>
          ,
          <string-name>
            <given-names>K.</given-names>
            <surname>Hampel</surname>
          </string-name>
          ,
          <string-name>
            <given-names>C.</given-names>
            <surname>Toklu</surname>
          </string-name>
          .
          <article-title>An ontological knowledge framework for adaptive medical workflow</article-title>
          .
          <source>J Biomed Inform</source>
          <year>2008</year>
          ;
          <volume>41</volume>
          :
          <fpage>829</fpage>
          -
          <lpage>36</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref19">
        <mixed-citation>
          [22]
          <string-name>
            <surname>E.  E.</surname>
          </string-name>
            Matos,  F.  Campos,  R.  Braga,  D.  Palazzi,  “CelOWS:
          <article-title>  an  ontology  based framework for the provision of semantic web services related to biological models,”</article-title>
          <source>J. Biomed Inform</source>
          <year>2010</year>
          ;
          <volume>43</volume>
          :
          <fpage>125</fpage>
          -
          <lpage>38</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref20">
        <mixed-citation>
          [23]
          <string-name>
            <given-names>A.</given-names>
            <surname>Valls</surname>
          </string-name>
          ,
          <string-name>
            <given-names>K.</given-names>
            <surname>Gibert</surname>
          </string-name>
          ,
          <string-name>
            <given-names>D.</given-names>
            <surname>Sánchez</surname>
          </string-name>
          , M. Batet, “
          <article-title>Using ontologies for structuring organizational knowledge  in  home  care  assistance,”</article-title>
          <source>Int J Med Inform</source>
          <year>2010</year>
          ;
          <volume>79</volume>
          :
          <fpage>370</fpage>
          -
          <lpage>87</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref21">
        <mixed-citation>
          [24]
          <string-name>
            <given-names>D.</given-names>
            <surname>Riaño</surname>
          </string-name>
          ,
          <string-name>
            <given-names>F.</given-names>
            <surname>Real</surname>
          </string-name>
          ,
          <string-name>
            <given-names>J. A.</given-names>
            <surname>López-Vallverdú</surname>
          </string-name>
          ,
          <string-name>
            <given-names>F.</given-names>
            <surname>Campana</surname>
          </string-name>
          ,
          <string-name>
            <given-names>S.</given-names>
            <surname>Ercolani</surname>
          </string-name>
          ,
          <string-name>
            <given-names>P.</given-names>
            <surname>Mecocci</surname>
          </string-name>
          , and
          <string-name>
            <given-names>C.</given-names>
            <surname>Caltagirone</surname>
          </string-name>
          , “
          <article-title>An ontology-based personalization of health-care knowledge to support clinical decisions for chronically ill patients</article-title>
          ,”
          <source>  Journal of biomedical informatics</source>
          ,
          <volume>45</volume>
          (
          <issue>3</issue>
          ),
          <fpage>429</fpage>
          -
          <lpage>446</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref22">
        <mixed-citation>
          [25] “BioPAX : Biological Pathways Exchange,” http://www.biopax.
          <source>org /Accessed on July 18</source>
          ,
          <year>2014</year>
        </mixed-citation>
      </ref>
      <ref id="ref23">
        <mixed-citation>
          [26]
          <article-title>"About CCO and GexKB"</article-title>
          , Available at: http://www.semantic-systemsbiology.
          <source>org/apo/ Access on December 3</source>
          ,
          <fpage>2013</fpage>
        </mixed-citation>
      </ref>
      <ref id="ref24">
        <mixed-citation>
          [27]
          <string-name>
            <given-names>J. D.</given-names>
            <surname>Osborne</surname>
          </string-name>
          ,
          <string-name>
            <given-names>J.</given-names>
            <surname>Flatow</surname>
          </string-name>
          ,
          <string-name>
            <given-names>M.</given-names>
            <surname>Holko</surname>
          </string-name>
          ,
          <string-name>
            <given-names>S. M.</given-names>
            <surname>Lin</surname>
          </string-name>
          ,
          <string-name>
            <given-names>W. A.</given-names>
            <surname>Kibbe</surname>
          </string-name>
          ,
          <string-name>
            <given-names>L. J.</given-names>
            <surname>Zhu</surname>
          </string-name>
          , and
          <string-name>
            <given-names>R. L.</given-names>
            <surname>Chisholm</surname>
          </string-name>
          , “
          <article-title>Annotating the human genome with Disease Ontology,”  BMC genomics</article-title>
          ,
          <volume>10</volume>
          (
          <issue>Suppl 1</issue>
          ),
          <fpage>S6</fpage>
          ,
          <year>2009</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref25">
        <mixed-citation>
          [28]
          <string-name>
            <surname>M. Van Gurp</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          <string-name>
            <surname>Decoene</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          <string-name>
            <surname>Holvoet</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>and M. C.</surname>
          </string-name>
          dos Santos, “
          <article-title>LinKBase, a Philosophically-Inspired Ontology for NLP/NLU Applications,”</article-title>
          <source>In KR-MED</source>
          , November,
          <year>2006</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref26">
        <mixed-citation>
          [29]
          <string-name>
            <given-names>P. L.</given-names>
            <surname>Whetzel</surname>
          </string-name>
          , and et al. “NCBO Technology:
          <article-title>Powering semantically aware applications,” J. Biomedical Semantics, 4(S-1</article-title>
          ),
          <fpage>S8</fpage>
          ,
          <year>2013</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref27">
        <mixed-citation>
          [30]
          <string-name>
            <given-names>W. J.</given-names>
            <surname>Bug</surname>
          </string-name>
          , Ascoli,
          <string-name>
            <surname>J. SGrethe</surname>
          </string-name>
          ,
          <string-name>
            <given-names>A.</given-names>
            <surname>Gupta</surname>
          </string-name>
          ,
          <string-name>
            <given-names>C.</given-names>
            <surname>Fennema-Notestine</surname>
          </string-name>
          ,
          <string-name>
            <given-names>A. R.</given-names>
            <surname>Laird</surname>
          </string-name>
          ,
          <string-name>
            <surname>A. R.</surname>
          </string-name>
          , ... and
          <string-name>
            <given-names>M. E.</given-names>
            <surname>Martone</surname>
          </string-name>
          , ”
          <article-title>The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience</article-title>
          ,”  Neuroinformatics,
          <volume>6</volume>
          (
          <issue>3</issue>
          ),
          <fpage>175</fpage>
          -
          <lpage>194</lpage>
          ,
          <year>2008</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref28">
        <mixed-citation>
          [31]
          <string-name>
            <given-names>M. Q.</given-names>
             Stearns, C. Price, K. A., Spackman, and A. Y. 
            <surname>Wang</surname>
          </string-name>
          , 
          <article-title>“SNOMED  clinical terms: overview of the development process and project status</article-title>
          ,” 
          <source>In Proceedings of the AMIA Symposium</source>
          (p.
          <fpage>662</fpage>
          ). American Medical Informatics Association.
          <year>2001</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref29">
        <mixed-citation>
          [32]
          <string-name>
            <given-names>B.</given-names>
            <surname>Smith</surname>
          </string-name>
          ,
          <string-name>
            <given-names>M.</given-names>
            <surname>Ashburner</surname>
          </string-name>
          ,
          <string-name>
            <given-names>C.</given-names>
            <surname>Rosse</surname>
          </string-name>
          ,
          <string-name>
            <given-names>J.</given-names>
            <surname>Bard</surname>
          </string-name>
          ,
          <string-name>
            <given-names>W.</given-names>
            <surname>Bug</surname>
          </string-name>
          , W. Ceusters,... and
          <string-name>
            <surname>S.</surname>
          </string-name>
            Lewis,  “The  OBO 
          <article-title>Foundry:  coordinated  evolution  of  ontologies  to  support  biomedical  data  integration,” Nature biotechnology</article-title>
          ,
          <volume>25</volume>
          (
          <issue>11</issue>
          ),
          <fpage>1251</fpage>
          -
          <lpage>1255</lpage>
          .
          <year>2007</year>
        </mixed-citation>
      </ref>
      <ref id="ref30">
        <mixed-citation>
          [33]
          <string-name>
            <surname>J.</surname>
          </string-name>
          Day-Richter, M.  A.,  Harris,  M.  Haendel,  and  S.  Lewis,”OBO -Editan  ontology  editor  for  biologists.” Bioinformatics,
          <volume>23</volume>
          (
          <issue>16</issue>
          ),
          <fpage>2198</fpage>
          -
          <lpage>2200</lpage>
          .
          <year>2007</year>
        </mixed-citation>
      </ref>
      <ref id="ref31">
        <mixed-citation>
          [34]
          <string-name>
            <given-names>D. A.</given-names>
            <surname>Natale</surname>
          </string-name>
          ,
          <string-name>
            <given-names>C. N.</given-names>
            <surname>Arighi</surname>
          </string-name>
          , W. C,
          <string-name>
            <surname>Barker</surname>
            ,
            <given-names>J. A.</given-names>
          </string-name>
          <string-name>
            <surname>Blake</surname>
            ,
            <given-names>C. J.</given-names>
          </string-name>
          <string-name>
            <surname>Bult</surname>
          </string-name>
          , M. Caudy,...  and  C.  H.  Wu,  “The  Protein 
          <article-title>Ont ology: a structured representation  of  protein  forms  and  complexes,”</article-title>
          <source>Nucleic acids research</source>
          ,
          <volume>39</volume>
          (
          <issue>suppl 1</issue>
          ),
          <fpage>D539</fpage>
          -
          <lpage>D545</lpage>
          .
          <year>2011</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref32">
        <mixed-citation>
          [35]
          <string-name>
            <given-names>T. L.</given-names>
            <surname>Beauchamp</surname>
          </string-name>
          ,
          <string-name>
            <given-names>J. F.</given-names>
            <surname>Childress</surname>
          </string-name>
          . “Principles of Biomedical Ethics,”
          <article-title>Third Edition</article-title>
          . New York: Oxford University Press,
          <year>1989</year>
          :
          <fpage>1</fpage>
          -
          <lpage>470</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref33">
        <mixed-citation>
          [36]
          <string-name>
            <given-names>R. R.</given-names>
            <surname>Faden</surname>
          </string-name>
          ,
          <string-name>
            <given-names>C.</given-names>
            <surname>Becker</surname>
          </string-name>
          ,
          <string-name>
            <given-names>C.</given-names>
            <surname>Lewis</surname>
          </string-name>
          ,
          <string-name>
            <given-names>J.</given-names>
            <surname>Freeman</surname>
          </string-name>
          ,
          <article-title>and</article-title>
          <string-name>
            <surname>A. I. Faden</surname>
          </string-name>
          , “
          <article-title>Disclosure of information to patients in medical care</article-title>
          ,
          <source>” Medical Care</source>
          ,
          <fpage>718</fpage>
          -
          <lpage>733</lpage>
          .
          <year>1981</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref34">
        <mixed-citation>
          [37]
          <string-name>
            <surname>D. M. Studdert</surname>
          </string-name>
          ,
          <string-name>
            <surname>M. M. Mello</surname>
            ,
            <given-names>M. K.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Levy</surname>
            ,
            <given-names>R. L.</given-names>
          </string-name>
          <string-name>
            <surname>Gruen</surname>
            ,
            <given-names>E. J.</given-names>
          </string-name>
          <string-name>
            <surname>Dunn</surname>
            ,
            <given-names>E. J.</given-names>
          </string-name>
          <string-name>
            <surname>Orav</surname>
            , and
            <given-names>T. A.</given-names>
          </string-name>
          <string-name>
            <surname>Brennan</surname>
          </string-name>
          , “
          <article-title>Geographic variation in informed consent law: two standards for disclosure of treatment risks</article-title>
          ,”
          <source>  Journal of Empirical Legal Studies</source>
          ,
          <volume>4</volume>
          (
          <issue>1</issue>
          ),
          <fpage>103</fpage>
          -
          <lpage>124</lpage>
          ,
          <year>2007</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref35">
        <mixed-citation>
          [38]
          <string-name>
            <surname>C.</surname>
          </string-name>
           B. Fisher,“Goodness -of-Fit 
          <article-title>Ethic for Informed Consent”, </article-title>
          <string-name>
            <given-names>A.</given-names>
            <surname>Urb</surname>
          </string-name>
          . LJ,
          <volume>30</volume>
          ,
          <fpage>159</fpage>
          ,
          <year>2002</year>
        </mixed-citation>
      </ref>
      <ref id="ref36">
        <mixed-citation>
          [39]
          <string-name>
            <given-names>F. C.</given-names>
            <surname>Bourgeois</surname>
          </string-name>
          ,
          <string-name>
            <given-names>P. L.</given-names>
            <surname>Taylor</surname>
          </string-name>
          , S. J.
          <string-name>
            <surname>Emans</surname>
            ,
            <given-names>D. J.</given-names>
          </string-name>
          <string-name>
            <surname>Nigrin</surname>
          </string-name>
          , and
          <string-name>
            <surname>K. D. Mandl</surname>
          </string-name>
          , “Whose 
          <article-title>personal control? Creating private,p ersonally controlled  health  records  for  pediatric  and  adolescent  patients</article-title>
          ,”  Journal  of  the  American Medical Informatics Association,
          <volume>15</volume>
          (
          <issue>6</issue>
          ),
          <year>2008</year>
          .
          <fpage>737</fpage>
          -
          <lpage>743</lpage>
          .
        </mixed-citation>
      </ref>
      <ref id="ref37">
        <mixed-citation>
          [40] “OpenMRS Developer Guide”.  OpenMRS  Website,  Available  at:  https://wiki.openmrs.org/display/docs/Developer+Guide Accessed May,
          <year>2013</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref38">
        <mixed-citation>
          <source>[41] “YAWL Technical Manual 2</source>
          .1 version”. YAWL Website, Available at:  http://www.yawlfoundation.org/manuals/YAWLTechnicalManual2.1.pd f Accessed May,
          <year>2013</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref39">
        <mixed-citation>
          [42]
          <string-name>
            <surname>“</surname>
            <given-names>YAWL </given-names>
          </string-name>
          <article-title>User  Manual”</article-title>
          .
          <source>YAWL Website</source>
          , Available http://www.yawlfoundation.org/yawldocs/YAWLUserManual2.0.pdf Accessed May,
          <year>2013</year>
          .
        </mixed-citation>
      </ref>
    </ref-list>
  </back>
</article>