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  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Task 2a: Team KU-CS: Query Coherence Analysis for PRF and Genomics Expansion</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Ornuma Thesprasith</string-name>
          <email>ornuma.thesprasith@gmail.com</email>
          <email>p@10</email>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Chuleerat Jaruskulchai</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>Department of Computer Science, Faculty of Science, Kasetsart University</institution>
          ,
          <country country="TH">Thailand</country>
        </aff>
      </contrib-group>
      <abstract>
        <p>Laypeople who are not medical expert may formulate short query using words from their discharge summaries or long query that explain their health conditions. The di erent query styles should be treated with di erent query expansion mechanisms. This work is an adaptive query expansion based on the coherence among query terms. To provide users with more readability documents, the document complexity is analiyzed on the word lenght and is used as a re-ranking method. The baseline retrieves using Lucene v.4.6 with default con guration. Overall retrieval performance of the baseline is better than the adaptive query expansion (P@10, MAP, and NDCG). Since the complexity of document uses only length of word, the readability performance after re-ranking is poorly performing.</p>
      </abstract>
      <kwd-group>
        <kwd>Adaptive query expansion</kwd>
        <kwd>Query coherence analysis</kwd>
        <kwd>Genomics expansion</kwd>
        <kwd>Readability</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>-</title>
      <p>
        Health information is now available on the web and easy to access by
nonprofessionals who associate to health care system and called laypeople. The
2015 CLEF eHealth [
        <xref ref-type="bibr" rid="ref1">1</xref>
        ] aims to help laypeople in seeking health information.
To foster research and development of health-related search engine, the 2015
CLEF eHealth Task 2 [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ] provides a shared collection of health-related web
pages and queries set. This task assumes that laypeople formulate query with
more terms to represent a single medical term. For example, \white part of eye
turned green" means to medical term \jaundice" [
        <xref ref-type="bibr" rid="ref3">3</xref>
        ].
      </p>
      <p>From the example, we assume that the medical term(s) should be presented
in the relevant web page(s) and may be absented from the query. There is a gap
between query and relevant web pages. Query expansion (QE) technique is
commonly used to handle this situation. Since there are many approaches for doing
expansion, we examine the e ectiveness of di erent query expansion approaches
for di erent query styles. This work examines three local-based and one
globalbased query expansion mechanisms. The local-based QE uses documents from
the initial query retrieval and the global-based QE uses all documents from the
collection for term selection.</p>
      <p>The degree of coherence among query terms is used to estimate performance
of the query retrieval, called QPPpair. We assume that the query with
performing well should be expanded with terms from the small-size of top-ranked
documents or no need to expand any term. Because these documents are assumed
to be the relevance. The query with performing poorly should be expanded with
terms from the entire collection or from an external source.</p>
      <p>In addtion to retrieve more useful web pages, the results should be easy
to read for laypeople. According to the readability requirement, factors used
to evaluate the readability [4{6] are sentence length, number of sentences, the
number of syllables or number of characters per word. Since our work treats the
collection as a bag of words therefore we assume that long word is a complex
word and then the complexity of document can be estimated by the frequency
of the long words.</p>
      <p>
        In this paper, we use the following techniques to achieve the CLEF 2015
eHealth Task 2 [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ] task; query performance prediction, query expansion and
document readability. The existing and related works of each technique are brie y
introduced in the next section. Our purposed method is described in the
Section 3. The experiment setting is explained in the Section 4. The results and
discussion are in the Section 5 and 6, respectively.
2
2.1
      </p>
    </sec>
    <sec id="sec-2">
      <title>Related Works</title>
      <sec id="sec-2-1">
        <title>Query Performance Prediction</title>
        <p>
          Query performance prediction (QPP) [
          <xref ref-type="bibr" rid="ref10">10</xref>
          ] estimates retrieval e ectiveness
without relevance judgments. The utilization of the QPP method is not limit to
estimate performance of query only, but also to determine query expansion
mechanism and to select the most e ectiveness expansion source as reported in works
[
          <xref ref-type="bibr" rid="ref7 ref8">7, 8</xref>
          ].
        </p>
        <p>
          The survey of pre-retireval QPP predictors [
          <xref ref-type="bibr" rid="ref9">9</xref>
          ] have organized the QPP
predictors as speci city, ambiguity, term relatedness, and ranking sensitivity. The
speci city of query is estimated from frequency of query term(s) in the collection
and number of documents that term presents. For example, the Average Inverse
Collection Term Frequency (AvICTF)[
          <xref ref-type="bibr" rid="ref10">10</xref>
          ] prefers terms that infrequenty appear
in the collection. The query with high AvICTF value should be related to the
documents that contain these speci c terms and these documents may be the
relevant documents. The work [
          <xref ref-type="bibr" rid="ref8">8</xref>
          ] has used the AvICTF [
          <xref ref-type="bibr" rid="ref10">10</xref>
          ] to adapt query
expansion mechanisms; non-expansion, or expand with terms from collection that
have the highest AvICTF value. Our work is inspired by this work [
          <xref ref-type="bibr" rid="ref8">8</xref>
          ] but we
use di erent QPP measure.
        </p>
        <p>
          We focus on the term relatedness of QPP predictor because we assume that
query from laypeople contains more terms, as seen from the query example,
therefore relation among query terms may be re ect to the query performance.
The examples of the term relatedness-based QPP predictors [
          <xref ref-type="bibr" rid="ref9">9</xref>
          ] are the
Average Pointwise Mutual Information (AvPMI), the Maximum Pointwise Mutual
Information (MaxPMI) and the query coherence score[
          <xref ref-type="bibr" rid="ref11">11</xref>
          ].
2.2
        </p>
      </sec>
      <sec id="sec-2-2">
        <title>Query Expansion Approaches</title>
        <p>
          Query expansion (QE) is a technique which new terms are added to an original
query and assumes that the new term(s) should be enlarging the document range
for second-pass retrieval. There are two major factors that in uence on the
effectiveness of QE technique; term selection method and reweighting method[
          <xref ref-type="bibr" rid="ref12">12</xref>
          ].
Our work focuses on the rst factor only by investigating di erent sources of
terms for expansion. The term selection method based on local context
analysis method[
          <xref ref-type="bibr" rid="ref13">13</xref>
          ] is reported in[
          <xref ref-type="bibr" rid="ref14">14</xref>
          ]. They constructed concept hierarchies from
text corpus and then provided related concept(s) for users to select in
interactive expansion manner. This idea is also applied in the construction of semantic
network for interactive query expansion[
          <xref ref-type="bibr" rid="ref15">15</xref>
          ].
        </p>
        <p>
          There are three steps of concept selection described in[
          <xref ref-type="bibr" rid="ref15">15</xref>
          ]. The rst step is
ltering concepts from terms. A concept is a term that frequently appears in
the retrieved documents set respect to entire collection. The second step is
nding the important concepts based on entropy of these concepts. The important
concepts should not frequently appear or infrequently appear in the retrieved
set. The entropy will be decreased if a concept is appeared more often or rarely.
The third step is nding the related concepts based on conditional probability.
Two concepts will be related if their conditional probabilities are more than a
threshold.
2.3
        </p>
      </sec>
      <sec id="sec-2-3">
        <title>Readability</title>
        <p>
          Readability of health information is a current issue as seen in many current
works examined the readability of web pages. Each work focuses on di erent
health condition such as epilepsy[
          <xref ref-type="bibr" rid="ref4">4</xref>
          ], breast cancer[
          <xref ref-type="bibr" rid="ref5">5</xref>
          ], stroke[
          <xref ref-type="bibr" rid="ref6">6</xref>
          ]. The commonly
used readability measures are the Fleshch-Kincaid grade level and the Simple
Measure of Gobbledygook (SMOG). The factors commonly used in the
readability formulas are sentence length, number of sentences, the number of syllables
or characters per word. Although these studies are focused on di erent topics,
their conclusion are in common. They found that health-related web pages have
a high grade level of the readability which uneasy to understand by laypeople.
        </p>
        <p>
          The alternative way to measure readability is using language model[
          <xref ref-type="bibr" rid="ref16">16</xref>
          ] . The
model estimates the reading di culty of web pages as the classi cation task.
The reading level classi er is based on linear combination of language model
and surface linguistic features in the document.
3
3.1
        </p>
      </sec>
    </sec>
    <sec id="sec-3">
      <title>Methods</title>
      <sec id="sec-3-1">
        <title>QPP Based on Query Term Coherence</title>
        <p>
          Given an assumption that characteristic of the query of CLEF 2015 task[
          <xref ref-type="bibr" rid="ref2">2</xref>
          ]
consists of more general words, we aim to measure the relatedness among query
terms. If a pair of two terms occurs more often together in the corpus, then the
pair is seem to be related. Since we have observed that non-stop words in one
line of scienti c papers are approximately appeared 7-8 words. Therefore in this
work we xed window size at 7 word lenght for determining the pair.
        </p>
        <p>Our QPP method is called the QP P pair, which measures how many pairs of
query terms existing in the collection (called P airExist) respect to all possible
pairs in the query (called AllP airs). The formula for measuring query coherence
is de ned as Equation 1.</p>
        <p>QP P pair(Q) =
p2QP airExist(p)</p>
        <p>AllP air(Q)
(1 , if pair exist in collection</p>
        <p>0 , otherwise
P airExist(p) =</p>
        <p>AllP air(Q) =
p2QP air(p)
and
pP RF (xi) = TPFRPFRFsi(zxei) &gt; c1</p>
        <p>pP RF (xi)
pcollection(xi)
In the preliminary experimental, we have examined the QP P pair of query set in
three collections; CLEF eHealth 2014, TREC Genomics 2004, and OHSUMED.
The results show that the Genomics collection is more consistent with the CLEF
collection so that we use the Genomics collection as external source of query
expansion. We use the average of the QP P pair value of three collections to
determine query expansion mechanism.
There are ve query expansion mechanisms; no query expansion, expanded with
top-small PRF set, expanded with top-medium PRF of both local and external
collection, expanded with top-large PRF of both local and external collection,
and expanded with co-occurrence terms in global collection.</p>
      </sec>
      <sec id="sec-3-2">
        <title>Pseudo Relevance Feedback Query Expansion (PRF-QE). The retrieved</title>
        <p>
          documents contain at least one query term. The top-ranked documents should
contain more query terms and assumed that indirectly related to a whole query.
In this PRF-QE method, we select concept terms from terms within the PRF
set based on the work [
          <xref ref-type="bibr" rid="ref15">15</xref>
          ] and nally select terms with the high speci city value
based on collection and document frequency.
        </p>
        <p>Given a set, P RF = (x1; x2; :::; xn) where xi is a term in the PRF set.
There are two conditions for nding concept terms; Equations 4 and Equation
5, respectively. The rst condition measures how importance of term respect to
the PRF set based on the distribution of term. The second condition measures
the importance of term respect to entire collection.</p>
        <p>Now we have a number of concepts that dervied from Equation 4-7. Then
nally select smaller number of concepts for expansion based on collection
frequency and document frequency value as the following equation.</p>
        <p>ConceptSpecif icity(c) =
log(CF (c))</p>
        <p>DF (c)
where T FP RF (x) is a total frequency of term x in the PRF set and P RF size
is a number of retrieved documents in PRF set. The pcollection(x) is distribution
of term x in the collection and measured by total collection frequency of term x
respect to total documents in the collection.</p>
        <p>To lter important concept, the entropy of a concept in the retrieved set is
derived from the following equation.</p>
        <p>G(xi) =</p>
        <p>pP RF (xi)log(pP RF (xi))</p>
        <p>To select most related concepts, the conditional probability of them is used
in the following conditions.</p>
        <p>pP RF (xijxj ) &gt; sa
and
pP RF (xj jxi) &gt; sb
(7)
(6)
(8)
where CF (c) is the collection frequency of concept c and DF (c) is document
frequency that concept c appeared.</p>
      </sec>
      <sec id="sec-3-3">
        <title>Cross Collection PRF-QE (CLEF-GPRF-QE). We assume that top-ranked</title>
        <p>
          documents that retrieved from external collection are also indirectly related with
original query. Some queries are improved by this method as reported in work[
          <xref ref-type="bibr" rid="ref8">8</xref>
          ]
and in our previous work [
          <xref ref-type="bibr" rid="ref17">17</xref>
          ]. In the current work we also use TREC Genomics
2004 collection as external source and then results from the initial retrieval in
this collection are used to expand queries.
        </p>
        <p>The method to select concepts is based on the PRF-QE method that
described in the previous section. In addtion, threshold values of external collection
are less than the CLEF collection, called target collection. Because the query is
generated for the target collection therefore retreived size and related terms of
the external are likely to be less than the target one.</p>
      </sec>
      <sec id="sec-3-4">
        <title>Global Collection Query Expansion (Global-QE). We assign this method</title>
        <p>for the query with lowest QP P pair value. This method is based on co-occurrence
assumption that two terms frequently occur together in the same context, are
likely to be related. The pair is two terms (ti; tj ) within a small window length.
This work xes window length at 7 words for the co-occurrence condition. The
set of pairs is P airSet = (p1; p2; :::; pk). Each pair pi has the collection frequency
ci called cotimes and this value is used to select the most related of a query term.
The cotimes set is CoT ime = (&lt; p1; c1 &gt;; &lt; p2; c2 &gt;; :::; &lt; pk; ck &gt;).</p>
        <p>The steps of nding related terms from the co-occurrence terms are following.
1. Ascending sort the document frequency of query terms,</p>
        <p>DF sorted = (q1; q2; :::; qm).
2. Start from qi, lookup a corresponding pair(s) in the P airSet then take them
to the CandidateP air set.</p>
        <p>{ if qi does not exits in the P airSet set, increment i.
3. For each candidate pair, lookup the corresponding cotimes in the CoT ime
set.
4. Descending sort candidate pairs according to the cotimes value,
{ if the pair pi consists of one query term as (qi; qi), then cotimes ci of the
pair pi is used to select other term(s),
{ otherwise, select top 5 terms from the sorted CandidateP air set.
3.3</p>
      </sec>
      <sec id="sec-3-5">
        <title>Readability based on Documents Complexity</title>
        <p>To return most readability documents to user, we measure the complexity of
document based on word length with the assumption that long word is the
complex word. The document contains more complex words may be high complexity
and uneasy to understand.</p>
        <p>DocComplex(d) =</p>
        <sec id="sec-3-5-1">
          <title>T otalComplexW ordInDocument(d) DocumentLength(d)</title>
          <p>(9)</p>
          <p>After retreival we re-rank each 200 documents in the results set with the
following equation.</p>
          <p>ComplexV al(d) = 1</p>
        </sec>
        <sec id="sec-3-5-2">
          <title>2:5 DocComplex(d)</title>
          <p>(10)
4</p>
        </sec>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>Experimental Design</title>
      <p>We submit four runs where Run2 examines both query analysis method and
query expansion method. Run3 and Run4 examine re-ranking method based on
complexity of retrieved document.</p>
      <p>
        Run1. The baseline retrieves with original title query using Lucene 4.6 [
        <xref ref-type="bibr" rid="ref18">18</xref>
        ] with
      </p>
      <p>StandardAnalyzer con guration and using Lucene's default VSM similarity.
Run2. The adaptive query expansion is using the QP P pair to determine the
expansion mechanism.</p>
      <p>Run3. The re-ranking version of Run1 based on complexity of document.
Run4. The re-ranking version of Run2 based on complexity of document.</p>
      <sec id="sec-4-1">
        <title>Determine Query Expansion Mechanisms. Queries are analyzed with the</title>
        <p>QP P pair as described in Equation 1. Then each query is assigned with one of
ve group and detail as the shown in Table 1. We note that values of QP P pair
in each group are from human estimation.
One 0.5 &lt;= x No expansion
Two 0.2 &lt;= x &lt; 0.5 PRF-QE with top 100 documents
Three 0.1 &lt;= x &lt; 0.2 CLEF-GPRF-QE with top 500 documents
Four 0 &lt; x &lt; 0.1 CLEF-GPRF-QE with top 1000 documents
Five 0 = x Global-QE
This task consists of two relevant judgments. The rst one is traditional
evaluation meaurement that shows retrieval performance such as P@10 and NDCG.
The second measurement is readability-biased evaluation. The comparison of the
P@10 with other teams shown in Fig1,2,3, and 4. The map, P@10,NDCG cut 5
and NDCG cut 10 of our four runs are shown in Table 4. The readability
performance of all runs are shown in Table 5.</p>
      </sec>
    </sec>
    <sec id="sec-5">
      <title>Discussion</title>
      <p>Query Coherence Analysis. The query with more existing pairs in the corpus
does not guarantee that the result set will be more relevant as seen that queries
Q7,Q15,Q37, and Q51 have the high QppP air value but the P@10 value of these
queries is not better than the median retrieval performance. Because Lucene's
default similarity function computes weight of individual term not pair of terms.</p>
      <p>
        Using the QPPpair to determine expansion mechanism is still better than
expand all queries with the same mechanism. We believe that there are
alternative ways to take advantage from these existing pairs such as reform the query
to add more weight on the pair or search query with phrase option.
Query Expansion Mechanism. The work [
        <xref ref-type="bibr" rid="ref15">15</xref>
        ] have provided candidate terms
for users to select in interactive manner but our work automatically selects terms
from the same candidate set for expansion. Our expansion terms are mixing both
useful and misleading terms because the theshold values as shown the Table 2
and Table 3 are setting with heuristic manner. By setting these parameters, we
observe candidate terms derived from di erent threshold values of some queries.
This is not a systematic manner for tuning parameter.
      </p>
      <p>For expansion based on PRF set, the candidate terms sensitive to the tuning
parameter. Even the queries are in the same group, the candidate terms for some
query are likely to be related while others are drifting.</p>
      <p>For global expansion method, the candidate terms are derived from the
cooccurrence terms of the most speci city term in the query. This method is
working for some query, for example, Q61. \ ngernail bruises", the co-occurrence
terms of " ngernail" are useful for expansion. On the other side, for example,
Q59. \heavy and squeaky breath", the co-occurrence terms of the \squeaky" are
not useful for expansion. This is the weakness of this method.</p>
      <p>Document Complexity Method. The complexity document score is using
only word length and then re-ranking retrieved documents. This method gets
the worse results. Therefore using more features of the document is necessary to
estimate the complexity.</p>
    </sec>
  </body>
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