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    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Optimized workflow for US/MeVis-CT based registration in image guided liver surgery</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>D. Ribes</string-name>
          <email>delphine.ribes@artorg.unibe.ch</email>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>M. Peterhans</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>S. Anderegg</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>S. Weber</string-name>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>CAScination AG</institution>
          ,
          <addr-line>Computer Assisted Soft Tissue Surgery</addr-line>
          ,
          <country country="CH">Switzerland</country>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>University of Bern, ARTORG Center for Biomedical Engineering Research</institution>
          ,
          <addr-line>Bern</addr-line>
          ,
          <country country="CH">Switzerland</country>
        </aff>
      </contrib-group>
      <fpage>55</fpage>
      <lpage>57</lpage>
      <abstract>
        <p>In order to utilize the concept of image-guided surgery during liver surgery, a fast and locally accurate patient-to-image registration workflow using ultrasound (US) and MeVis-CT data was developed. The method was applied during the surgery of six patients and available accuracy was identified. We present here the framework, the required time as well as the navigation accuracy reached. Problem A prerequisite to stereotactic i.e. image-guided surgery utilizing preoperative CT/MRI-data is a precise alignment of the image data with the patient. Many methodologies have been proposed in the literature to perform registration of preoperative data (e.g. CT) to intra-operative data (US) [1]. However, to our best knowledge, only methods based on surface information [2-3] have been routinely used in clinical settings; Principal reasons being the simplicity and the technical feasibility of using such a technic in the operating theatre. Based on an existing navigation system for liver surgery (CAS-One Liver, CAScination AG, Switzerland), we have developed, implemented and tested an US to MeVis-CT based registration workflow with a low level of complexity that can be operated in clinic routine solely by the surgeon itself. Within this paper, we present our optimized solution together with a quantitative evaluation of the required time and effective navigation accuracy.</p>
      </abstract>
      <kwd-group>
        <kwd>Liver Surgery</kwd>
        <kwd>Registration</kwd>
        <kwd>Ultrasound</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>Methods</title>
    </sec>
    <sec id="sec-2">
      <title>2.1 US-to-CT registration workflow</title>
      <p>Pre-operative: Preoperatively, CT data is processed towards a virtual 3D model containing various anatomical structures
using a distant service (MeVis Medical Solutions AG). The return analysis contains the CT greyscale images (3 phases),
the segmentation masks of the CT structures (liver surface, hepatic and portal veins, metastasis and/or tumors) and the
surface models of the structures. The virtual 3D model is then transferred to the navigation system via USB.
System set-up: The navigation system is placed by the nurse near the cranial end of the surgical table, and one monitor
(sterile) is placed above the patient’s chest allowing the surgeons to interact with the system. All surgical instruments,
including an integrated ultrasound probe are attached with optical references and geometrically calibrated. The patients
virtual 3D model is loaded and displayed on the navigation systems screen
Registration: Following initial surgical procedures such as mobilization of the liver, the surgeon carries out the
registration of the 3D model with the patient anatomy using the following workflow:
1) Identification of a suitable vein bifurcation close to the site of interest (i.e. a tumor): By pressing the touch screen at
the desired correct position the software automatically places the virtual probe in an optimal position and
orientation within the 3D model (Figure 1a). Additionally, the system generates a visual overlay from the 3D model and
corresponding to the current US plane. This helps the surgeon to precisely place the ultrasound probe according to
the selected landmark (Figure 1b).</p>
      <p>Acquisition of 3D-US around the predefined bifurcation (region of interest, ROI): A feedback loop algorithm (Figure
2a) is applied. It records incoming US images from inside the pre-defined region of interest, automatically segments [4]
and compounds the data in real time (c++ with CUDAC and open inventor) to create a 3D intra-operative US vessel
model. The acquisition automatically stops when a threshold number of pixels, denoting intra-operative vessels
structures in the ROI have been reached.
3) Automatic calculation of a locally rigid registration transformation between US and MeVis-CT: an adaptive sampling
method which uses a generalized binary space partition is applied [5] registering segmented vessels from the
acquired US data and pre-operative vessels from the MeVis analysis (c++ and boost).
Twelve 3D-datasets of corresponding MeVis-CT and US imagery were collected during 6 surgeries through the
navigation system and the presented workflow. Time required for performing the registration attempts was recorded.
Intraoperatively, after each registration attempt, the surgeons used the enhanced US feature to evaluate the navigation
accuracy. Then a postoperative assessment of resulting navigation accuracy was performed. Datasets were manually
segmented (MS) and aligned (MA) to create a ground truth. The manual alignment was repeated 3 times per dataset and
averaged. The distance between corresponding points in the ground truth dataset and the registered one was used as
error measure (correspondence between points on two identical segmented surface meshes avoids errors introduced by
correspondence finding). Errors are reported for the region of interest (ROI) where ultrasound data was acquired
(=surgical site of interest).
3</p>
    </sec>
    <sec id="sec-3">
      <title>Results 4</title>
    </sec>
    <sec id="sec-4">
      <title>Discussion</title>
      <p>On average 35 ± 6.2 seconds are required for the acquisition of the 3D US data, 36.5 ± 12.5 seconds for the automatic
registration. Over the 17 registration attempts performed, surgeons rejected 5 (30%). Post-operative evaluation of the
effective accuracy within the non-rejected registration attempts recorded (and subsequently recorded US volume) was
4.52 +/- 3.6 mm (n=12). Surgeons reported that the enhanced US view helped to correctly identify initial vein
bifurcations for registration as well as maintaining an overall orientation in the parenchyma. Additionally, enhanced US feature
allowed to efficiently assess the available navigation accuracy and thus the quality of the image-guidance.
We present here an entire workflow based on US registration which is both feasible and sufficiently accurate for using
in clinic routine. Furthermore, US-to-CT registration offers unprecedented accuracy even within the parenchyma, when
compared to other currently available surface based registration approaches. Also the presented methodology was
optimized to reduce the number of interaction with the navigation system as well as the level of complexity permitting a
fast learning process for clinicians. However, further refinement of the algorithm can be performed. Currently only a
rigid registration is applied resulting in a local registration accuracy (over segments). Presently no accurate liver
deformation model is available as the rigidity of the organ depends on the disease as well as on the applied pre-operative
treatments (e.g. chemotherapy). A further study would investigate the size of the navigation accuracy that could be
reached with our methology in regards to the liver disease. Moreover, the current registration process required around 1
minute to be performed. Ultimately, we aim to reduce the amount of US data required for registration while at the same
time increasing the procedural overload. The current framework is now included into commercially available systems
and further clinical studies are being prepared.
5</p>
    </sec>
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