SMBM 2016
Semantic Mining in Biomedicine

Table of Contents

• Preface
  
  

Keynote Talks

• Translational Text Mining (invited talk) 1
  Ulf Leser
• Structuring Knowledge on Human Diseases: Challenges and Opportunities (invited talk) 2
  Laura Furlong

Long Papers

• Performance of Gene Name Recognition Tools on Patents 3-10
  Maryam Habibi , David Luis Wiegandt , Florian Schmedding , Ulf Leser
• Using a Hybrid Approach for Entity Recognition in the Biomedical Domain 11-19
  Marco Basaldella , Lenz Furrer , Nico Colic , Tilia Ellendorff , Carlo Tasso , Fabio Rinaldi
• Simplifying Drug Package Leaflets 20-28
  Isabel Segura Bedmar , Luis Núñez-Gómez , Paloma Martínez Fernández , Maribel Quiroz
• Early Detection of Acute Kidney Injury with Bayesian Networks 29-36
  Harry Freitas Da Cruz , Bastien Grasnick , Henriette Dinger , Frank Bier , Christoph Meinel
• Disease Named Entity Recognition Using Conditional Random Fields 37-41
  Thomas Hahn , Hidayat Rahman , Richard Segall

Short Papers

• Exploiting Tree Kernels for High Performance Chemical Induced Disease Relation Extraction 42-47
  Nagesh Panyam Chandrasekarasastry , Karin Verspoor , Trevor Cohn , Ramamohanarao Kotagiri
• Text Mining and Expert Curation to Develop a Database on Psychiatric Diseases and their Genes 48-55
  Alba Gutiérrez Sacristán , Álex Bravo , Marta Portero , Olga Valverde , Antonio Armario , M.C. Blanco-Gandía , Adriana Farré , Lierni Fernández-Ibarrondo , Francina Fonseca , Jesús Giraldo , Angela Leis , Anna Mané , M.A. Mayer , Sandra Montagud-Romero , Roser Nadal , Jordi Ortiz , Francisco Javier Pavon , Ezequiel Perez , Marta Rodríguez-Arias , Antonia Serrano , Marta Torrens , Vincent Warnault , Ferran Sanz , Laura I. Furlong
• Annotation Process, Guidelines and Text Corpus of Small Non-Coding RNA Molecules: the MiNCor for MicroRNA Annotations 56-63
  Jose Camilla Sammartino , Martin Krallinger , Alfonso Valencia
• Marker Words for Negation and Speculation in Health Records and Consumer Reviews 64-69
  Maria Skeppstedt , Carita Paradis , Andreas Kerren
• Diagnostic Free Text Analysis in Biobanks with CRIP.CodEx: Automated Matching of Classifications 70-74
  Oliver Gros , Reinhard Thasler
• A Curation Pipeline and Web-Services for PDF Documents 75-79
  André Santos , Sérgio Matos , David Campos , José Luís Oliveira

Demo Papers

• TextAI: Enhancing TextAE with Intelligent Annotation Support 80-84
  Maximilian Grundke , Johannes Jasper , Mariya Perchyk , Jan Philipp Sachse , Ralf Krestel , Mariana Neves
• A Light-weight & Robust System for Clinical Concept Disambiguation 85-89
  Dirk Weissenborn , Roland Roller , Feiyu Xu , Hans Uszkoreit , Enrique Garcia Perez