ODLS 2016
Ontologies and Data in Life Sciences

Table of Contents

• Preface i–viii
  (including title page, imprint, organizers, program committee, authors, keynote speakers and keynote abstracts, program and table of contents)
  
  

Papers

• Deep Learning meets Semantic Web: A feasibility study with the Cardiovascular Disease Ontology and PubMed citations A.1–6
  Mercedes Argüello Casteleiro , George Demetriou , Warren J. Read , Maria Jesus Fernandez Prieto , Diego Maseda-Fernandez , Goran Nenadic , Julie Klein , John A. Keane , Robert Stevens
• A document-centric approach for developing the tolAPC Ontology B.1–6
  Aisha Blfgeh , Jennifer D. Warrender , Catharien M. U. Hilkens , Phillip Lord
• Challenges and opportunities for system biology standards and tools in medical research C.1–6
  Matthias König , Anika Oellrich , Dagmar Waltemath , Richard J. B. Dobson , Tim J. P. Hubbard , Olaf Wolkenhauer
• Querying standardized EHRs by a Search Ontology XML extension (SOX) D.1–5
  Stefan Kropf , Alexandr Uciteli , Peter Krücken , Kerstin Denecke , Heinrich Herre
• Towards standardized evidence descriptors for metabolite annotations E.1–5
  Daniel Schober , Reza M. Salek , Steffen Neumann
• A Whiteheadian approach to data and knowledge F.1–6
  Sebastian Siemoleit , Heinrich Herre
• Risk Identification Ontology (RIO): An ontology for specification and identification of perioperative risks G.1–7
  Alexandr Uciteli , Juliane Neumann , Kais Tahar , Kutaiba Saleh , Stephan Stucke , Sebastian Faulbrück-Röhr , André Kaeding , Martin Specht , Tobias Schmidt , Thomas Neumuth , Andreas Besting , Frank Portheine , Heinrich Herre
  
  

Extended Abstracts

• A modelling pattern for multi-track dispositions for life-science ontologies H.1–2
  Adrien Barton , Ludger Jansen
• FAIRDOM approach for semantic interoperability of systems biology data and models I.1–2
  Olga Krebs , Katy Wolstencroft , Natalie J. Stanford , Norman Morrison , Martin Golebiewski , Rostyk Kuzyakiv , Stuart Owen , Quyen Nguyen , Jacky L. Snoep , Wolfgang Mueller , Carole A. Goble
• MeTMapS – Medical Terminology Mapping System J.1–2
  Shao Fen Liang , Jean-François Ethier , Talya Porat , Archana Tapuria , Brendan C. Delaney , Vasa Curcin
• Qualitative assessment of annotations using SNOMED CT K.1–2
  José Antonio Miñarro-Giménez , Catalina Martínez-Costa , Stefan Schulz
• Extracting process graphs from medical text data L.1–2
  Andreas Niekler
• Ontological interpretation of biomedical database annotations M.1–2
  Filipe Santana da Silva , Ludger Jansen , Fred Freitas , Stefan Schulz