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https://ceur-ws.org/Vol-1729/preface.pdf
Ural-PDC 2016
Preface
This volume contains the papers presented at Ural-PDC 2016: 2nd Ural Work-
shop on Parallel, Distributed, and Cloud Computing for Young Scientists
(http://ural-pdc.org/2016/) held on October 6, 2016 in Yekaterinburg, Russia.
Ural-PDC is jointly organized by the Krasovskii Institute of Mathematics
and Mechanics and the Ural Federal University. The aim of the workshop is to
build the community of young researchers who work on modern problems in
parallel, distributed, cloud computing, and to provide an academic forum that
fosters them to share their ideas and results.
The key topics of interest are high-performance computing, distributed com-
puting, cloud computing, Big Data processing, parallel computing education, and
various applications of parallel and distributed computing. We have received 18
submissions, each of which has been reviewed by at least three program commit-
tee members. The committee decided to accept 12 papers and 2 invited papers;
only 10 of those papers have been included into the present proceedings volume.
Last but not least, we are grateful to our program and organizing committees,
who made the workshop possible.
November, 2016 Andrey Sozykin
Yekaterinburg, Russia Elena Akimova
Dmitry Ustalov
Copyright c 2016 for the individual papers by the papers’ authors. Copying per-
mitted for private and academic purposes. This volume is published and copyrighted
by its editors. The entire volume is available at http://ceur-ws.org/.
Table of Contents
Parallel Numerical Methods for Ordinary Differential Equations: a Survey 1
Svyatoslav I. Solodushkin and Irina F. Iumanova
Post-Processing the Results of Metastable States Molecular Dynamics
Simulation . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 11
Andrey Sozykin, Natalia Neustroeva, Vladimir Baidakov, Sergey
Protsenko, Vasiliy Brukhanov, Konstantin Ushenin and Arsenii
Krasnobaev
CPU and GPU Parallel Kramers-Klein Calculations . . . . . . . . . . . . . . . . . . . 17
Bogdan I. Iaparov, Anton N. Karmatsky and Alexander S. Moskvin
Principles of Computing Resources Planning in Cloud-Based Problem
Solving Environment . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 22
Kirill Borodulin and Gleb Radchenko
Parallel Left Ventricle Simulation Using the FEniCS Framework . . . . . . . . 29
Timofei Epanchintsev and Vladimir Zverev
Parallel Algorithms for Solving Linear Systems with Block-Fivediagonal
Matrices on Multi-Core CPU . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 38
Dmitry Belousov and Elena Akimova
Automatic Launch and Tracking the Computational Simulations with
LiFlow and Sumatra . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 49
Evgheniy Kuklin and Konstantin Ushenin
Research of Student Prospects on Developing International PhD
Programs in Software Engineering . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 56
Lyudmila Gadasina, Sergey Voitenko and Alexandr Yurkov
Performance Evaluation of Space Fractional FitzHugh-Nagumo Model:
an Implementation with PETSc Library . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 66
Nikita Markov, Konstantin Ushenin and Ahmed Hendy
Parallel Algorithm for Natural Neighbor Interpolation . . . . . . . . . . . . . . . . . 78
Alexander Tsidaev
ii
Program Committee
Elena Akimova Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Vitalii Berdyshev Krasovskii Institute of Mathematics and Mechanics
Alexei Dukhanov ITMO University
Evgeny Ivanko Krasovskii Institute of Mathematics and Mechanics
Iosif Meyerov Lobachevsky State University of Nizhni Novgorod
Sergey Pravdin Ghent University
Gleb Radchenko South Ural State University
Anastasia Shamakina High Performance Center Stuttgart
Oleg Shapovalov Singularis Lab, LLC
Vladislav Shchapov Institute of Continuous Media Mechanics
Svyatoslav Solodushkin Ural Federal University
Andrey Sozykin Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Vladimir Titarev Dorodnicyn Computing Center
Vladimir Ustinov Ural Federal University
Vladimir Zverev Ural Federal University
Mikhail Zymbler South Ural State University
Invited Reviewers
Alexander Bocharov Ural Federal University
Constantin Pan Postgres Professional
Organizing Committee
Andrey Sozykin Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Alexander Bersenev Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Mikhail Chernoskutov Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Timofey Epanchintsev Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Evgeniy Kuklin Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Natalia Neustroeva Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
Dmitry Ustalov Krasovskii Institute of Mathematics and Mechanics /
Ural Federal University
iii