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  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Automatic Analysis of the Tree Crowns Through Image Processing</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Nail F. Nizametdinov</string-name>
          <email>niznail@yandex.ru</email>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Zufar Ya. Nagimov</string-name>
          <email>nagimov@usfeu.ru</email>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>Ural State Forestry Engineering University</institution>
          ,
          <addr-line>620100, Russia, Ekaterinburg</addr-line>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>Ural state forest Engineering university</institution>
          ,
          <addr-line>620100, Russia, Ekaterinburg</addr-line>
        </aff>
      </contrib-group>
      <abstract>
        <p>In these article we present resuls of research work about estimation of tree stands using digital images of tree crowns. We have concluded that using of combination of automatic image processing and visual analysis is a best solution, in these case. The condition of trees can be correctly estimated if we will use semiautomatic image processing for defoliation measurement and visual analysis of arrangement of needles on the branches and analysis of crown dieback. We presented methods of expression of tree stands condition using special indexes. We developed special scale for tree stand assessing and created a map of forest condition.</p>
      </abstract>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>Introduction</title>
    </sec>
    <sec id="sec-2">
      <title>Methods</title>
      <p>Now we have a lot of methods for tree condition assessment. For tree condition assessment we can use many
parameters. For example: We can calculate count of needles on tree branches, we can measure annual growth, we can
use physiological parameters (concentration of metals or sulfur content).</p>
      <p>This approach can give us stable and very accurate results (data). But we must spend too much time, to get results.</p>
      <p>
        Other way to estimate trees condition is visual methods. Morphometric characteristics are quite to describe and
assess tree condition status. As example: Crown density, Transparency of Foliage (Defoliation), Crown discoloration,
Crown dieback. However, the result of visual assessment depends on observers [
        <xref ref-type="bibr" rid="ref1">1</xref>
        ]. Visual parameters may be
overestimated or underestimated.
      </p>
      <p>
        Last time we see many interesting publications devoted to using digital images of crowns in tree state assessment
[
        <xref ref-type="bibr" rid="ref2 ref3 ref6">2,3,6</xref>
        ]. These methods should be tested and developed.
      </p>
      <p>
        The goal of this research work was to improve visual assessment of tree condition, using digital images of tree
crowns.
Research (Developers are SIAMS company(Russia) and Smart Imaging Technologies (USA)). We measured each
crown photo. On first step we have identified silhouette of crown (threshold segmentation, gaps revealing algorithm)
[
        <xref ref-type="bibr" rid="ref3">3</xref>
        ].
      </p>
      <p>On second step using ―threshold segmentation‖ function we have found gaps in crown.</p>
      <p>And finally, to get Defoliation index we divided area of gaps in crown into general crown area. The defoliation
index is expressed in relative units (for example 0.04, 0.02).</p>
      <p>All the set value of the index of defoliation was divided into four categories.</p>
      <p>Some images of tree crown were preprocessed before defoliation measurement. We manually removed neighboring
trees branches (Fig 1 A). In case of strong degree of defoliation and crown dieback we manually defined contour of tree
tops (Fig 1 B).</p>
      <p>Fig 1. Tree crown images preprocessing
А – manual removing of neighboring trees branches ; B – manual definition of tree top contour.</p>
      <p>Arrangement of needles on the branches is the parameter that is connected with reduction of needles lifetime and
reduction of growth.</p>
      <p>If tree has growth reduction, the distance between the needles is reduced. Bottom part of branches is free from
needles. As result tree has needles located at the top part of branches.</p>
      <p>If growth of tree is normal, needles is located on the branches evenly.</p>
      <p>Using this parameter we defined two types of trees (Fig. 2):
a) needles are located at the top part of branches;
b) needles are distributed uniformly.</p>
      <p>Crown dieback the other parameter we have used.</p>
      <p>Using this parameter we defined three types of trees (Fig. 3):
a) Crown has no dieback;
b) Crown has some dead branches;
c) Top of Tree is dead.</p>
      <p>Crown dieback and arrangement of needles on the branches were defined visually using photos.</p>
      <p>On these grounds, all trees were categorized into four groups indices of visual assessment (VA):
1. healthy trees - needles distributed uniformly, crown has no dieback
2. weak trees - needles located at the top part of branches, crown has no dieback
3. very weak trees - needles located at the top part of branches, crown has some dead branches
4. dries out trees - needles located at the top part of branches, top of tree is dead</p>
      <p>Then we used four visual assessment categories an four defoliation categories to build table of combined indices of
tree condition (CIC).
when tree has normal , weak degree of defoliation,
or when tree has strong degree of defoliation, but visually tree is assessed as healthy and weak
We did it because it is better to use visual assessment data if top of tree is dead, but crown is very dense. Or if tree is
visually healthy but has weak degree of defoliation.</p>
      <p>Combined index is increased by one, if visually tree is healthy or weak but has very strong degree of defoliation.</p>
      <p>We assessed the condition of stand on each sampling plot. We used the median value of a range of Combined index.
After we defined four categories of stand condition:
1.
2.
3.
4.</p>
      <p>good condition, if median value on plot is less than 1.5;
satisfactory condition - median value on plot is from 1.5 to 2.4;
bad condition - median value on plot is from 2.5 to 3.5;
very bad condition - median value on plot is more than 3.5.</p>
    </sec>
    <sec id="sec-3">
      <title>Results</title>
      <p>We made two plots of dependence of the state of trees and distance from copper smelting factory. One plot for
western direction and one plot for eastern direction.</p>
      <p>We can see that forest condition indices are reducing if distance from copper smelting factory is increasing. It means
that forests health is better if distance from factory is longer.</p>
      <p>Pearson corellation coefficient is -0.586 for eastern direction and -0,645 for western direction. The significance level
of the Pearson correlation coefficient is 5%.</p>
      <p>Creation of a map of forest condition is next step of our work. To get it we made statistical surface using our plots
and interpolation function in geographical information system. Then we defined zone boundaries (Fig. 3).</p>
      <p>
        Biggest part on this map is zone of satisfactory condition. Forests with good condition placed in the northern,
southern, western, and eastern border. Forests in bad condition placed around the cooper smelter factory. Zone of very bad
condition is located to the northeast of factory, at a distance of 2-3 km. I guess the reason is prevailing winds from west.
This result correspond to previous research works[
        <xref ref-type="bibr" rid="ref7 ref8">7,8</xref>
        ].
Fig. 2 Tops of tree: a - needles are located at the top part of branches; b — needles are distributed uniformly.
      </p>
    </sec>
    <sec id="sec-4">
      <title>Conclusion</title>
      <p>Digital images of pine tree crowns can be used for correct estimation of tree stands condition. Best choice is
combination of automatic image processing and visual analysis of the crown characteristics. Combined indices of tree
condition allows us to define four categories of stand condition and special scale bar of stand condition. This method and
geographical interpolation procedure allow us to get a map of stand condition.</p>
      <p>Bibliographic list</p>
    </sec>
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