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  <front>
    <journal-meta>
      <journal-title-group>
        <journal-title>Spatial Knowledge and Information Canada</journal-title>
      </journal-title-group>
    </journal-meta>
    <article-meta>
      <title-group>
        <article-title>A functional data analysis approach for characterizing spatial-temporal patterns of landscape disturbance and recovery from remotely sensed data</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>GORDON B. STENHOUSE Grizzly Bear Program</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>Foothills Research Institute</institution>
        </aff>
      </contrib-group>
      <pub-date>
        <year>2019</year>
      </pub-date>
      <volume>7</volume>
      <issue>2</issue>
      <fpage>134</fpage>
      <lpage>142</lpage>
      <abstract>
        <p />
      </abstract>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>-</title>
      <p>Contemporary landscape regionalization
approaches, frequently used to summarize
and visualize complex spatial patterns and
disturbance regimes, often do not account
for the temporal component which may
provide important insight on disturbance,
recovery, and change in ecological
processes. The objective of this research was
to employ novel statistical approaches in
functional data analysis to quantify and
cluster spatial-temporal patterns of
landscape disturbance and recovery in 223
watersheds using a Landsat disturbance
time series from 1985 – 2011 in western
Alberta, Canada. Cumulative spatial
patterns of disturbance, representing the
proportion, arrangement, size, and number
of disturbances per watershed, were
modelled as functions and scores from a
functional principal component analysis
were clustered using a Gaussian finite
mixture model. The resulting eight
watershed clusters were mapped with mean
functions representing unique temporal
trajectories of disturbance and recovery.
There was considerable variability in
disturbance amplitude among the clusters
which increased markedly in the mid-1990’s
while remaining low in parks and protected
areas. The regionalization highlights unique
temporal trajectories of disturbance and
recovery driven by anthropogenic and
natural disturbances and enables insight
regarding how cumulative spatial
disturbance patterns evolve through time.</p>
    </sec>
    <sec id="sec-2">
      <title>1. Introduction</title>
      <p>
        Terrestrial ecosystems are subject to a range
of natural and anthropogenic disturbances
that influence landscape dynamics and
heterogeneity. In North America, the
frequency, extent, and severity of natural
disturbances, including forest fires and
insect infestations, has been increasing due
to anthropogenic influences and climate
change (Turner, 2010). Similarly,
anthropogenic activities and anthropogenic
pressures on many terrestrial ecosystems
are growing as resource extraction activities,
including forest harvest, road network
development, and energy development and
mining contribute to land use change and
landscape fragmentation (Pickell et al.,
2016). Cumulatively, landscape disturbance
is temporally dynamic given
postdisturbance recovery, regeneration, and
succession. As such, monitoring and
quantifying how spatial patterns of natural
and anthropogenic landscape disturbance
change over time is critical for
understanding how ecological processes are
influenced by disturbance and recovery.
Change detection and attribution of
disturbance from remotely sensed time
series data provide opportunities to develop
new hypotheses on disturbance recovery
and land cover change. The spatial
resolution and longevity of the Landsat
mission, in particular, allows detection of
landscape alterations that are the result of a
given management or land use decision over
large areas in a systematic fashion
        <xref ref-type="bibr" rid="ref2">(Wulder
et al., 2012)</xref>
        . While regionalization
approaches, where geographic entities are
grouped based on common factors to
summarize complex landscape and
environmental factors (Hargrove and
Hoffman 2004), have been developed to
characterize spatial patterns of landscape
disturbance (e.g., Long et al., 2010), the
temporal dynamics of disturbance and
recovery are often left unaccounted which
can influence interpretation of resulting
patterns (Pickell et al., 2016).
      </p>
      <p>The goal of this study is to characterize
disturbance as a temporally dynamic,
allowing us to quantify and map cumulative
patterns of landscape disturbance while
simultaneously accounting for recovery. To
this end, we develop a novel functional data
analysis regionalization of landscape
disturbance in 223 watersheds in western
Alberta, Canada from 1985 to 2011 using
Landsat disturbance time series data
(Hermosilla et al., 2015). Methods in
functional data analysis (FDA) are
specifically designed to characterize
multivariate high-dimensional time series
data (Ramsay &amp; Silverman, 2005). Using
the FDA framework, our regionalization
identifies unique temporal trajectories of
cumulative disturbance patterns
representing underlying distributions and
spatial-temporal dynamics of specific
natural and anthropogenic disturbance
types, including forest fires, harvest, and
roads (Bourbonnais et al., 2017).</p>
    </sec>
    <sec id="sec-3">
      <title>2. Methods and Data</title>
      <sec id="sec-3-1">
        <title>2.1 Landsat data pattern metrics and disturbance</title>
        <p>
          The study used a novel Canada-wide
landscape disturbance time series derived
from a best-available pixel Landsat data
product where disturbances, including
forest harvest, oil and gas well-sites, roads,
forest fires, and non-stand replacing
disturbances (e.g., insects and drought)
were detected and attributed annually from
1985 – 2011 (Hermosilla et al., 2015). Using
the Landsat disturbance time series, spatial
patterns of landscape disturbance were
quantified annually using the proportion
area disturbed, the probability of
disturbance adjacency, the mean
disturbance patch area, and the number of
disturbance patches in 223 watersheds in
western Alberta. Watersheds were selected
as the landscape unit of analysis for the
regionalization as they are commonly used
as an environmentally relevant scale for
monitoring forest and land cover changes
          <xref ref-type="bibr" rid="ref1">(Wulder et al., 2009)</xref>
          . The disturbance
pattern metrics were adjusted annually to
account for recovery by comparing the
normalized burn ratio (NBR =
(B4B7)/(B4+B7) where B4 and B7 correspond
to Landsat bands 4 – near-infrared – and 7
– short-wave infrared, respectively) from
the pre- and post-disturbance periods (Key
&amp; Benson, 2006). A disturbance pixel was
considered recovered, and subsequently
masked from the annual disturbance
pattern metrics, when the post-disturbance
NBR values reached 80% of the mean pixel
NBR values from the two years preceding
disturbance (Pickell et al., 2016).
        </p>
      </sec>
      <sec id="sec-3-2">
        <title>2.2 Functional regionalization data analysis</title>
        <p>In the FDA framework, discrete time series
observations (i.e., disturbance pattern
metrics) are considered to arise through the
regular sampling of a smooth function (i.e.,
curve) rather than thought of as a
realization from a multivariate distribution
(Ramsay &amp; Silverman, 2005). Following the
FDA approach, the time series of discrete
disturbance pattern metrics in each
watershed were converted to curves using
Bsplines as the basis function. We used a
functional principal component analysis
(FPCA), which estimates a set of
eigenvalueeigenfunction pairs, to quantify the primary
modes of temporal variation among the
curves for each of four disturbance pattern
metrics (Ramsay &amp; Silverman, 2005). For
each of the four disturbance pattern metrics,
we computed the minimum number of
FPCA scores, representing the difference
from the mean disturbance pattern curve,
required to explain 90% of the functional
variance in the curves. The FPCA scores (n =
11), which represent the primary modes of
temporal variation in the disturbance
pattern metric curves, formed the basis for
our regionalization. We regionalized
watersheds with common disturbance
patterns by clustering the FPC scores using
Gaussian finite mixture models with the
optimal number of groups selected using the
negative of the Bayesian Information
Criterion (Fraley &amp; Raftery, 2002). The
clustered watersheds were then mapped and
compared using the mean disturbance
pattern metric curves by region. We further
explored variability in pattern metrics of
attributed disturbances (fire, harvest, roads,
well-sites, and non-stand replacing) for each
watershed cluster using a functional
analysis of variance (FANOVA) by
comparing the mean curves based on shape
and temporal variability (Ramsay &amp;
Silverman, 2005).</p>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>3. Results</title>
      <p>Three FPCA scores were required to explain
90% of the variance in the proportion
disturbance, probability of disturbance
adjacency, and mean disturbance patch
area, and two scores for the number of
disturbance patches (Figure 1). Amplitude
in the first FPCA score, representing the
greatest deviation of the curve from the
mean, generally increased markedly
beginning in the mid-1990’s characterizing
differing disturbance pattern trajectories
resulting from a rapid increase in resource
extraction and industrial activity in the
region.</p>
      <p>The Gaussian finite mixture model
incorporating the eleven FPCA scores with
the greatest support (BIC = -2095.35)
resulted in eight disturbance pattern regions
(Figure 2). Watersheds in clusters 1
(35.92%), 5 (16.33%), and 4 (13.46%)
represented the greatest proportion of the
study area. The amplitude (i.e., vertical) and
phase (i.e., horizonal) variability of the
fourdisturbance pattern metric mean curves
characterized periods of increasing
disturbance (i.e., increasing curve
amplitude) and spectral recovery (i.e.,
decreasing curve amplitude) among the
watershed regions. Watersheds in clusters 1,
2, 3, 5, and 6 had increasing amplitude
throughout the study period with notable
recovery beginning circa 2005. Conversely,
regions occurring primarily in parks and
protected areas (clusters 4, 7, and 8) had the
lowest overall disturbance amplitude.</p>
      <p>Interestingly, while the mean proportion
disturbance, probability of disturbance
adjacency, and mean disturbance patch size
curves demonstrated periods of recovery
(i.e., periods of decreasing amplitude in the
curve), the number of disturbance patches
generally increased over time suggesting
spatial variability in recovery may result in a
complex spatial mosaic of patches in
different successional states (Gómez et al.,
2011).
Figure 2. Mean curves by cluster for the proportion disturbance (A), the
probability of disturbance adjacency (B), the mean disturbance patch area (C), and
the number of disturbance patch (D) pattern metrics. Each mean curve is
associated with the watersheds mapped by cluster membership (E). Parks and
protected areas are shown in green.
and recovery as a single continuous function
The watershed clusters also revealed can reveal properties of the underlying
variability in the amplitude and phase of the ecological processes and how patterns of
mean disturbance pattern metrics for the landscape disturbance evolve over a
attributed disturbance types compared continuum (Pickell et al., 2016). However, it
using FANOVA (Figure 3). Mean forest fire is difficult to quantify landscape disturbance
curves were significantly different (p &lt; 0.05) cumulatively and to account for the
among the watershed clusters, with large temporal dynamics of disturbance and
forest fires prevalent in clusters 2 and 5. recovery, as well as the interaction of
Trajectories representing the mean multiple sources of natural and
proportion area disturbed and number of anthropogenic disturbance. Using the novel
disturbed patches for forest harvest, roads, FDA approach described here, regional
and well-sites were also significantly spatial-temporal disturbance patterns can
different among the clusters, and had the be interpreted through representative
greatest amplitude in clusters 6, 1, 5, and 2 disturbance trajectories which illuminate
representing watersheds primarily outside the different disturbance processes and
of parks and protected areas. indicate where and when anthropogenic
disturbance is the dominant driver of
4. Conclusion observed patterns in the study area. As new
time series of disturbance and land cover
data become increasingly available,
FDAbased approaches can be useful for
quantifying and summarizing complex
spatial-temporal landscape patterns.</p>
      <p>While piece-wise properties of curves have
been employed to detect and quantify
disturbance patterns (Gómez et al., 2011),
modelling patterns of landscape disturbance
This work was supported by the Natural
Sciences and Engineering Research Council
of Canada through a Collaborative Research
and Development Grant (CRDPJ
48617415), a Canadian Graduate Scholarship, and
by the Foothills Research Institute Grizzly
Bear Project and its many funding partners.</p>
    </sec>
    <sec id="sec-5">
      <title>References</title>
      <p>Bourbonnais, M. L., Nelson, T. A.,
Stenhouse, G. B., Wulder, M. A., White, J.
C., Hobart, G. W., Hermosilla, T., Coops,
N. C., Nathoo, F., &amp; Darimont, C. T.
(2017). Characterizing spatial-temporal
patterns of landscape disturbance and
recovery in western Alberta, Canada using
a functional data analysis approach and
remotely sensed data. Ecological
Informatics, 39, 140–150.</p>
      <p>Gómez, C., White, J. C., &amp; Wulder, M. A.
(2011). Characterizing the state and
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Hermosilla, T., Wulder, M. A., White, J. C.,
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      <sec id="sec-5-1">
        <title>Key, C.H., Benson, N.C., 2006. Landscape Assessment: Sampling and Analysis</title>
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