<!DOCTYPE article PUBLIC "-//NLM//DTD JATS (Z39.96) Journal Archiving and Interchange DTD v1.0 20120330//EN" "JATS-archivearticle1.dtd">
<article xmlns:xlink="http://www.w3.org/1999/xlink">
  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>ScholarLensViz: A Visualization Framework for Transparency in Semantic User Pro les</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Felicitas Lo er</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Valentin Wesp</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Samira Babalou</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Philipp Kahn</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Rene Lachmann</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Bahar Sateli</string-name>
          <xref ref-type="aff" rid="aff3">3</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Rene Witte</string-name>
          <xref ref-type="aff" rid="aff3">3</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Birgitta Konig-Ries</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff1">1</xref>
          <xref ref-type="aff" rid="aff2">2</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>German Center for Integrative Biodiversity Research (iDiv)</institution>
          ,
          <addr-line>Halle-Jena-Leipzig</addr-line>
          ,
          <country country="DE">Germany</country>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>Heinz Nixdorf Chair for Distributed Information Systems Institute for Computer Science, Friedrich Schiller University Jena</institution>
          ,
          <country country="DE">Germany</country>
        </aff>
        <aff id="aff2">
          <label>2</label>
          <institution>Michael Stifel Center for Data-Driven and Simulation Science</institution>
          ,
          <addr-line>Jena</addr-line>
          ,
          <country country="DE">Germany</country>
        </aff>
        <aff id="aff3">
          <label>3</label>
          <institution>Semantic Software Lab, Concordia University</institution>
          ,
          <addr-line>Montreal</addr-line>
          ,
          <country country="CA">Canada</country>
        </aff>
      </contrib-group>
      <abstract>
        <p>Personalized applications are a two-edged sword. They are convenient and assist users by keeping the focus on relevant topics, but they are often black boxes and users typically do not know why certain entries appear in their pro le. As transparency and provenance are essential for researchers, in this paper, we introduce ScholarLensViz, a visualization component for scholarly user pro les displaying a scholar's research competences including the provenance. It also provides visualizations to inspect the diversity of a pro le and to analyze the semantic similarity of the pro le entries.</p>
      </abstract>
      <kwd-group>
        <kwd>Visualization</kwd>
        <kwd>Provenance</kwd>
        <kwd>Semantic User Pro les</kwd>
        <kwd>LOD</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>-</title>
      <p>
        Scholarly user pro les are gaining increasing attention and are becoming more
important for various application scenarios, such as expertise retrieval [
        <xref ref-type="bibr" rid="ref10">10</xref>
        ],
search and recommendation of research articles [
        <xref ref-type="bibr" rid="ref1">1</xref>
        ] or research network
analysis [
        <xref ref-type="bibr" rid="ref6">6</xref>
        ]. These intelligent systems support scholars in time-consuming daily tasks,
such as data discovery and data reuse, by providing content tailored to a scholar's
preferences. In most applications, scholars are permitted to inspect these
collected user preferences but do not know where the information comes from.
However, the justi cation of entries is an important issue in scholarly pro les.
Users need explanations why a certain preference is presented.
? Copyright c 2020 for this paper by its authors. Use permitted under Creative
Commons License Attribution 4.0 International (CC BY 4.0).
      </p>
      <p>
        In this work, we address these issues and introduce ScholarLensViz 5, a
visualization framework to display scholarly pro les based on a semantic user model.
In earlier work, Bakalov et al. [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ] proved the feasibility of a transparent
visualization of semantic user pro les. We further developed that idea and present
a new graphical user interface with linkage to the LOD cloud. ScholarLensViz
presents a scholar's competences and their provenance. We obtain the
competences from publications and store them in an RDF graph, using a work ow
being introduced in our previous work ScholarLens [
        <xref ref-type="bibr" rid="ref8">8</xref>
        ]. The system also enables
the inspection of a pro le's diversity and provides visualizations to explore the
semantic similarity of the pro le entries.
2
      </p>
    </sec>
    <sec id="sec-2">
      <title>Related Work</title>
      <p>
        Various scholarly applications have emerged that create user pro les out of
different resources, for di erent purposes and with various visualizations. Semantic
Scholar [
        <xref ref-type="bibr" rid="ref1">1</xref>
        ], a smart search over research articles, generates user pro les from
publications based on paper heuristics. In contrast, AMiner [
        <xref ref-type="bibr" rid="ref10">10</xref>
        ] focuses on
expertise retrieval, a research eld that aims at nding experts on a certain topic.
Following a topic modeling approach, data is collected from institutional
websites, documents and conferences. The visualization provided includes radar
diagrams for author's statistics and stacked area charts for a scholar's automatically
extracted research interests. Full semantic approaches are VIVO [
        <xref ref-type="bibr" rid="ref5">5</xref>
        ] and
Scholia [
        <xref ref-type="bibr" rid="ref6">6</xref>
        ]. While VIVO provides a framework, an ontology and a graphical user
interface for representing and visualizing scholars and their research context
within an organization, Scholia aims at visualizing scienti c bibliographic
information through Wikidata. Both applications provide visualizations for co-author
networks and research topics a scholar is competent in. In addition, Scholia
offers various entry points to explore not only authors and publications but also
organizations, locations or projects and supports numerous display formats such
as timelines, scatter charts, line chart or trees. Provenance information, e.g.,
explanations from which source a topic or research interest has been extracted,
is less considered in current approaches for scholarly user pro les. Our system
attempts to close that gap and to leverage transparency and provenance in the
visualization of semantic user pro les.
3
      </p>
    </sec>
    <sec id="sec-3">
      <title>Architecture</title>
      <p>
        5 ScholarLensViz source code, https://github.com/fusion-jena/ScholarLensViz
Competence as a literal. These classes are used from the Competence
Management Ontology (CM) [
        <xref ref-type="bibr" rid="ref4">4</xref>
        ]. In addition, we model a user's publications with the
PUBO Ontology [
        <xref ref-type="bibr" rid="ref9">9</xref>
        ] that provides properties to describe relations between
documents and semantic annotations generated by the pipeline. The nal output is an
RDF graph containing the competences and being visualized by ScholarLensViz
(blue-colored). We separated the visualization (client-side) and the calls to the
knowledge base (server-side). Thus, a server handles the SPARQL requests and
provides HTTP methods to the client. This separation minimizes security risks
such as sending direct SPARQL queries from the client to the knowledge base.
Embedding ScholarLensViz into personalized applications, for instance as
widget or standalone application, requires additional authentication mechanism to
be handled by the integrating system (green-colored).
4
      </p>
    </sec>
    <sec id="sec-4">
      <title>ScholarLensViz</title>
      <p>
        ScholarLensViz provides three dialogs. (A) The start dialog aims to display a
user's Top-25 ranked competences and their provenance. The elements of the
pie chart (Fig. 2) represent a user's competences. The arc of the pie slices
denotes the competence rank, and the color represents the category obtained from
the Computer Science Ontology (CSO) [
        <xref ref-type="bibr" rid="ref7">7</xref>
        ] by matching the competence entries
(which are presented as DBpedia entities) with CSO labels. The comment tab,
becoming visible by clicking on a pie element, provides the competence
description obtained from DBpedia. In order to justify the origin of the competences,
we provide a provenance tab displaying the sentences from a user's publications
and highlighting the relevant phrases that contain the competence and its rank,
the paper title and, if available, the DOI.
      </p>
      <p>
        In order to inspect the diversity of a user's pro le and the semantic
similarity between the pro le entries, ScholarLensViz o ers two further charts (Fig. 3).
(B) A force-directed graph and (C) a chord chart visualizing the semantic
similarity and relatedness between the competences computed with Sematch [
        <xref ref-type="bibr" rid="ref11">11</xref>
        ].
While semantic similarity is hierarchy-based, the semantic relatedness
considers all relations between concepts [
        <xref ref-type="bibr" rid="ref11">11</xref>
        ]. We use the average of both values as
both values in uence the diversity of a pro le. The more diverse a pro le is,
the less strong connections appear in the force-directed graph per competence.
The chord chart allows a better analysis on the accumulated similarity values
over the selected competences. The length of the outer arc re ects the number
of similar connections a competence provides.
      </p>
    </sec>
    <sec id="sec-5">
      <title>Demonstration</title>
      <p>In this demo6, visitors can inspect the competences from known computer
scientists working in the elds of Semantic Web. In addition, we added experts from
other computer science domains as a basis for comparison. Users can select the
competences and can change the thresholds for the semantic similarity.
Acknowledgements This work was supported by the German Academic
Exchange Service (DAAD) within the scope of the PPP program and the Deutsche
Forschungsgemeinschaft (DFG) within the scope of the GFBio project (229241684).
6 https://dev.gfbio.org/scholar/</p>
    </sec>
  </body>
  <back>
    <ref-list>
      <ref id="ref1">
        <mixed-citation>
          1.
          <string-name>
            <surname>Ammar</surname>
            ,
            <given-names>W.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Groeneveld</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Bhagavatula</surname>
            ,
            <given-names>C.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Beltagy</surname>
            ,
            <given-names>I.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Crawford</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Downey</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Dunkelberger</surname>
            ,
            <given-names>J.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Elgohary</surname>
            ,
            <given-names>A.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Feldman</surname>
            ,
            <given-names>S.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Ha</surname>
            ,
            <given-names>V.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Kinney</surname>
            ,
            <given-names>R.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Kohlmeier</surname>
            ,
            <given-names>S.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Lo</surname>
            ,
            <given-names>K.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Murray</surname>
            ,
            <given-names>T.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Ooi</surname>
            ,
            <given-names>H.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Peters</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Power</surname>
            ,
            <given-names>J.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Skjonsberg</surname>
            ,
            <given-names>S.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Wang</surname>
            ,
            <given-names>L.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Wilhelm</surname>
            ,
            <given-names>C.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Yuan</surname>
            ,
            <given-names>Z.</given-names>
          </string-name>
          , van Zuylen,
          <string-name>
            <given-names>M.</given-names>
            ,
            <surname>Etzioni</surname>
          </string-name>
          ,
          <string-name>
            <surname>O.</surname>
          </string-name>
          :
          <article-title>Construction of the literature graph in semantic scholar</article-title>
          .
          <source>In: Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics</source>
          (
          <year>2018</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref2">
        <mixed-citation>
          2.
          <string-name>
            <surname>Bakalov</surname>
            ,
            <given-names>F.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Meurs</surname>
            ,
            <given-names>M.J.</given-names>
          </string-name>
          ,
          <article-title>Konig-</article-title>
          <string-name>
            <surname>Ries</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Sateli</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Witte</surname>
            ,
            <given-names>R.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Butler</surname>
            ,
            <given-names>G.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Tsang</surname>
            ,
            <given-names>A.</given-names>
          </string-name>
          :
          <article-title>An approach to controlling user models and personalization e ects in recommender systems</article-title>
          .
          <source>In: IUI. ACM</source>
          , New York, NY, USA (
          <year>2013</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref3">
        <mixed-citation>
          3.
          <string-name>
            <surname>Jovanovic</surname>
            ,
            <given-names>J.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Gasevic</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Siadaty</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          :
          <article-title>Intelleo user model ontology</article-title>
          . http: //intelleo.eu/ontologies/user-model/spec/ (
          <year>March 2012</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref4">
        <mixed-citation>
          4.
          <string-name>
            <surname>Jovanovic</surname>
            ,
            <given-names>J.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Siadaty</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Gasevic</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Milikic</surname>
          </string-name>
          , N.:
          <article-title>Intelleo competences ontology</article-title>
          . http://www.intelleo.eu/ontologies/competences/spec/ (
          <year>2011</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref5">
        <mixed-citation>
          5. Kra t, D.,
          <string-name>
            <surname>Cappadona</surname>
            ,
            <given-names>N.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Caruso</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Corson-Rikert</surname>
            ,
            <given-names>J.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Devare</surname>
            ,
            <given-names>M.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Lowe</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          :
          <article-title>Vivo: Enabling national networking of scientists</article-title>
          .
          <source>In: Proceedings of the Web Science Conference</source>
          <year>2010</year>
          (
          <year>2010</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref6">
        <mixed-citation>
          6.
          <string-name>
            <surname>Nielsen</surname>
            ,
            <given-names>F.A.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Mietchen</surname>
            ,
            <given-names>D.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Willighagen</surname>
          </string-name>
          , E.:
          <article-title>Scholia, scientometrics and wikidata</article-title>
          . In: Blomqvist,
          <string-name>
            <given-names>E.</given-names>
            ,
            <surname>Hose</surname>
          </string-name>
          ,
          <string-name>
            <given-names>K.</given-names>
            ,
            <surname>Paulheim</surname>
          </string-name>
          ,
          <string-name>
            <given-names>H.</given-names>
            ,
            <surname>Lawrynowicz</surname>
          </string-name>
          ,
          <string-name>
            <given-names>A.</given-names>
            ,
            <surname>Ciravegna</surname>
          </string-name>
          ,
          <string-name>
            <given-names>F.</given-names>
            ,
            <surname>Hartig</surname>
          </string-name>
          ,
          <string-name>
            <surname>O</surname>
          </string-name>
          . (eds.) The Semantic Web:
          <article-title>ESWC 2017 Satellite Events</article-title>
          . pp.
          <volume>237</volume>
          {
          <fpage>259</fpage>
          . Springer International Publishing,
          <string-name>
            <surname>Cham</surname>
          </string-name>
          (
          <year>2017</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref7">
        <mixed-citation>
          7.
          <string-name>
            <surname>Salatino</surname>
            ,
            <given-names>A.A.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Thanapalasingam</surname>
            ,
            <given-names>T.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Mannocci</surname>
            ,
            <given-names>A.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Osborne</surname>
            ,
            <given-names>F.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Motta</surname>
            ,
            <given-names>E.</given-names>
          </string-name>
          :
          <article-title>The computer science ontology: A large-scale taxonomy of research areas</article-title>
          .
          <source>In: International Semantic Web Conference</source>
          <year>2018</year>
          , Monterey (CA), USA,
          <year>2018</year>
          .
        </mixed-citation>
      </ref>
      <ref id="ref8">
        <mixed-citation>
          8.
          <string-name>
            <surname>Sateli</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          , Lo er,
          <string-name>
            <surname>F.</surname>
          </string-name>
          ,
          <article-title>Konig-</article-title>
          <string-name>
            <surname>Ries</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Witte</surname>
          </string-name>
          , R.:
          <article-title>Scholarlens: extracting competences from research publications for the automatic generation of semantic user pro les</article-title>
          .
          <source>PeerJ Computer Science</source>
          <volume>3</volume>
          ,
          <issue>e121</issue>
          (
          <year>Jul 2017</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref9">
        <mixed-citation>
          9.
          <string-name>
            <surname>Sateli</surname>
            ,
            <given-names>B.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Witte</surname>
          </string-name>
          , R.:
          <article-title>Semantic representation of scienti c literature: bringing claims, contributions and named entities onto the linked open data cloud</article-title>
          .
          <source>PeerJ Computer Science</source>
          <volume>1</volume>
          ,
          <issue>e37</issue>
          (
          <year>Dec 2015</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref10">
        <mixed-citation>
          10.
          <string-name>
            <surname>Wan</surname>
            ,
            <given-names>H.</given-names>
          </string-name>
          , Zhang,
          <string-name>
            <given-names>Y.</given-names>
            ,
            <surname>Zhang</surname>
          </string-name>
          , J.,
          <string-name>
            <surname>Tang</surname>
          </string-name>
          , J.:
          <article-title>Aminer: Search and mining of academic social networks</article-title>
          .
          <source>Data Intelligence</source>
          (
          <year>2019</year>
          )
        </mixed-citation>
      </ref>
      <ref id="ref11">
        <mixed-citation>
          11.
          <string-name>
            <surname>Zhu</surname>
            ,
            <given-names>G.</given-names>
          </string-name>
          ,
          <string-name>
            <surname>Iglesias</surname>
            ,
            <given-names>C.A.</given-names>
          </string-name>
          :
          <article-title>Computing semantic similarity of concepts in knowledge graphs</article-title>
          .
          <source>IEEE Transactions on Knowledge and Data Engineering</source>
          <volume>29</volume>
          (
          <issue>1</issue>
          ) (
          <year>2017</year>
          )
        </mixed-citation>
      </ref>
    </ref-list>
  </back>
</article>