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  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Use of X-ray Computed Tomography to Estimate Sheep, Goat and Beef Carcass Composition - Preliminary Results</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Angeliki Argyriadou</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Mathieu Monziols</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Michail Patsikas</string-name>
          <xref ref-type="aff" rid="aff2">2</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Georgios Arsenos</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>IFIP institut du porc</institution>
          ,
          <addr-line>Le Rheu</addr-line>
          ,
          <country country="FR">France</country>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>Laboratory of Animal Husbandry, School of Veterinary Medicine, Faculty of Health Sciences, Aristotle University of Thessaloniki</institution>
          ,
          <country country="GR">Greece</country>
        </aff>
        <aff id="aff2">
          <label>2</label>
          <institution>Laboratory of Diagnostic Imaging, School of Veterinary Medicine, Faculty of Health Sciences, Aristotle University of Thessaloniki</institution>
          ,
          <country country="GR">Greece</country>
        </aff>
      </contrib-group>
      <fpage>37</fpage>
      <lpage>50</lpage>
      <abstract>
        <p>Greek ruminant meat production is challenged by the lack of objective carcass and meat evaluation protocols. X-ray Computed tomography (CT) is used as an innovative tool for carcass evaluation in many farm animal species. For the first time in Greece, in 2 beef, 13 sheep and 6 goat carcasses CT scans were performed to estimate carcass traits and composition. Image analysis protocols, formerly implemented in other species, were used to estimate carcass length and width as well as fat, muscle and bone volumes and weights. Our preliminary results indicate that accurate carcass composition estimations might be possible with the use of CT and image analysis. Results should be reevaluated on a bigger sample size. Concurrent carcass dissections could facilitate the validation of CT estimations. Standardization of carcass composition evaluation protocols based on non-destructive methods can certify meat quality and contribute to the overall competitiveness and sustainability of the sector.</p>
      </abstract>
      <kwd-group>
        <kwd>X-ray Computed Tomography</kwd>
        <kwd>ruminant carcass</kwd>
        <kwd>lean meat yield</kwd>
        <kwd>fat yield</kwd>
        <kwd>bone yield</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>1 Introduction</title>
      <p>
        Ruminant meat production in Greece represents 57.28% of non-poultry meat
production. In 2018, Greek beef, sheep and goat annual meat productions were 39.65,
50.57 and 19.56 thousand tons, respectively
        <xref ref-type="bibr" rid="ref14">(Ministry of Rural Development and
Food, 2018)</xref>
        . Only 30% of annual meat consumption is covered by domestic
production. Beef meat is mainly based on purebred or crossbred male beef cattle that
are slaughtered around the age of 24 months. Small ruminant meat production is a
secondary activity of dairy production and mostly very young or old animals are
slaughtered; no special diet is fed prior to slaughtering. Lack of objective carcass
evaluation protocols has led to dramatic decreases in meat price. Carcasses are usually
sold as whole or split in halves, a tradition which removed lamb and goat meat from
modern household routine and made it a seasonal delight. New tools are necessary to
evaluate carcass and meat quality and increase the competitiveness of the sector.
Herein, we explore X-ray Computed Tomography (CT) as an innovative approach
towards ruminant carcass quality evaluation.
      </p>
      <p>
        So far, CT implementation on sheep aimed to predict carcass composition on live
animals mostly for breeding purposes. Cross-sectional scans at three to seven specific
anatomical positions were performed; non-carcass tissues were segmented
semiautomatically with a specially designed image analysis software
        <xref ref-type="bibr" rid="ref10 ref11 ref12 ref6">(Lambe et al., 2003;
Karamichou et al., 2006; MacFarlane et al., 2006; Clelland et al., 2014)</xref>
        . The
‘reference’ scanning method, as it is known, is widely used for commercial purposes
because it is fast, accurate (R2 values ranging: 83-98.6%) and preserves animal welfare.
Prediction equations used are breed-specific; hence, more inclusive approaches are
needed
        <xref ref-type="bibr" rid="ref15">(Navajas et al, 2006)</xref>
        . Cavalieri method is an alternative which uses more
crosssectional images and utilizes inter-scan distances and tissue densities to estimate tissue
volumes and weights. It is equally accurate and applicable across breeds, but more
time-consuming (Bünger et al., 2011). Variations of the above are used in recent
studies as standard methods for in vivo
        <xref ref-type="bibr" rid="ref13">(Matika et al., 2016)</xref>
        or post-mortem carcass
composition evaluations
        <xref ref-type="bibr" rid="ref1">(Anderson et al., 2015; 2016)</xref>
        . Respective applications of CT
in dairy goats have been reported since the 1990’s
        <xref ref-type="bibr" rid="ref9">(Sørensen, 1992; Németh et al.,
2010; Eknaes et al., 2017)</xref>
        .
      </p>
      <p>
        An approach based on spiral CT scanning of primal cuts and image analysis with
special software has been used to estimate beef carcass composition
        <xref ref-type="bibr" rid="ref16 ref17">(Navajas et al.,
2010a)</xref>
        . Accurate predictions of carcass tissue weights have been reported (R2 =
0.890.97%). Large size of beef carcasses complicates CT scanning procedures and
increases relevant costs. Thus, recent studies focus on CT scanning of specific muscles
or carcass parts and investigate for possible correlations, which will allow predictions
of total carcass composition
        <xref ref-type="bibr" rid="ref16 ref17 ref3">(Navajas et al., 2010b; Anderson et al., 2018)</xref>
        .
      </p>
      <p>
        In another approach implemented on pigs, spiral CT scans are obtained from half
carcasses or specific commercial cuts and image analysis software is used to separate
tissues. To estimate tissue volumes and weights, voxel dimensions and tissue densities
are utilized; results are highly accurate
        <xref ref-type="bibr" rid="ref7">(Daumas and Monziols, 2011)</xref>
        . This method
can be implemented in a broad spectrum, since it was developed independently of
dissection
        <xref ref-type="bibr" rid="ref8">(Daumas and Monziols, 2016)</xref>
        .
      </p>
      <p>Considering the strengths and weaknesses of the above methods and the
peculiarities of Greek ruminant meat production, the present study is a preliminary
approach of CT as a post-mortem carcass evaluation tool in Greece.</p>
    </sec>
    <sec id="sec-2">
      <title>2 Objective</title>
      <p>The objective was twofold; (i) to use CT and image analysis protocols designed for
carcass evaluation in other species (ie. pigs), to estimate sheep, goat and beef carcass
traits (length, width) and composition parameters (volume and weight of muscle, fat
and bone tissues) and (ii) to compare the estimated sheep carcass quality parameters
with respective dissection data of a previous study.
3</p>
    </sec>
    <sec id="sec-3">
      <title>Materials and Methods</title>
      <sec id="sec-3-1">
        <title>3.1 Animals and Experimental Design</title>
        <p>Dairy sheep and goats (mostly fat-tailed Chios sheep or other crossbreds) of both
sexes at different live weights (representing 25%, 35%, 50%, 70% and 100% of mature
weight –Table 1) were selected. Male, crossbred beef cattle at the optimum finishing
weight were also selected. Animals were slaughtered in three commercial
slaughterhouses. Sheep and goat carcasses were chilled for 24 hours then transferred
to the CT scanner located at the Laboratory of Diagnostic Imaging, School of
Veterinary Medicine, Aristotle University of Thessaloniki. Chilled beef carcasses were
scanned 48 hours after slaughtering. In total, 13 sheep, 6 goat and 2 beef carcasses
were scanned.</p>
      </sec>
      <sec id="sec-3-2">
        <title>3.2 X-ray Computed Tomography</title>
        <p>Beef carcasses were split in halves and one half was scanned. Beef carcass halves
were dissected into six primal cuts (Figure 1) to facilitate the scanning procedure.
Sheep and goat carcasses were scanned intact and contained remaining organs (heart,
lungs, liver, internal fat, kidneys), except for heavier carcasses (70% and 100% of
mature weight). The latter were longer than the maximum scanning length (110 cm);
thus, two scans were performed representing front and back halves of carcasses. A
helical volume of data comprising the carcass was acquired at 150 mAs and 120 kV,
acquisition matrix 512x512 and convolution kernel STANDARD (soft tissues) using
a 16-row multi-detector CT scanner (Optima CT520, GE Hangwei Medical Systems,
Beijing China) (Figure 2). Transverse overlapping slices of carcass were obtained.
Slice thickness for small ruminants was 0.625 mm and ranged from 0.625 to 3.75 mm
for beef. Field of view (FoV) ranged depending on carcass width, as did tube current
since dose efficiency parameter (Optidose) was active (Table 2).</p>
      </sec>
      <sec id="sec-3-3">
        <title>3.3 Image Analysis</title>
        <p>Remaining organs segmentation was performed using TurtleSeg software (version
1.2.1). To eliminate differences due to operator effect, only one trained researcher
performed the protocol. Viscera area was selected by semi-manual contouring in
several images (Figure 3); after completion, a 3-dimensional grid containing all viscera
was created and exported as a new set of images, which was used to subtract these
organs from the original dataset.</p>
        <p>
          Sheep carcass dissection data (muscle and fat weight) of an earlier study
          <xref ref-type="bibr" rid="ref4">(Arsenos,
1997)</xref>
          were compared to the results of the present study. A total of 82 animals of both
sexes and different live weights (13.9 – 71.6 kg) were used. Carcasses were split in
halves and one half was fully dissected into muscle, fat and bone tissues, which were
weighted following dissection. To optimize comparison, carcasses of the earlier study
were grouped based on carcass weight to correspond to the weight categories of the
present study. Means of muscle and fat weight were calculated for each weight
category in each dataset.
        </p>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>Results and Discussion</title>
      <p>4.1</p>
      <sec id="sec-4-1">
        <title>CT Carcass Traits and Composition Parameters</title>
        <p>Means of carcass traits and composition parameters for each live weight category
per species are presented in Tables 3a and 3b. Total number of carcasses differs in each
weight category and in some cases no carcasses have been examined so far. As the
study is still ongoing, results presented here are preliminary. Completion of the
experiment will provide a larger sample of carcasses equally distributed in each live
weight category within species.</p>
        <p>Estimated carcass length and width were in the normal range for each species. The
method was fast and easily applicable; it is a good alternative to manual measurements.</p>
        <p>As discussed in the introduction, CT scanning of sheep has so far been implemented
in variable experimental protocols and on live animals. The latter complicate a direct
comparison of results. Anderson et al. (2015), used a similar approach on a large
sample (n=1665) of Merino sheep (mean carcass weight: 23.3 kg); mean fat and muscle
percentage were 27.0% and 57.1% of carcass weight, respectively. In the present study,
the respective values were 16.7% and 40.5%. The difference may be due to variations
between populations and samples; herein, a very limited sample (n=13) of dairy sheep
carcasses was used and mean carcass weighted only 16.9 kg.</p>
        <p>
          Studies on goats are limited and close to sheep ones regarding methods (Sørensen,
1992; Németh et al., 2010). In a recent study
          <xref ref-type="bibr" rid="ref9">(Eknaes et al. 2017)</xref>
          , adult lactating dairy
goats (mean live weight: 55.1-55.7 kg) were CT-scanned multiple times throughout
lactation and the reported mean fat and muscle weights ranged between 7.5-11.4 and
14.2-14.8 kg, respectively. Herein, one adult male goat carcass (carcass weight: 32.6
kg, live weight: 73.0 kg) was examined, and the respective values were 4.8 and 16.3
kg. Variations in experimental protocols between studies and physical differences
regarding tissue distribution and body weight between sexes might be causing the
observed discrepancies.
        </p>
        <p>Two beef carcasses (mean carcass weight: 389.9 kg) were examined and mean fat,
muscle and bone percentages estimated were 12.0, 70.1 and 17.9%, respectively.
Navajas et al. (2010a) followed a similar protocol for a bigger sample (n=44, mean
carcass weight: 356.5 kg) and estimated mean fat, muscle and bone percentage of 20.4,
64.1 and 15.4%. Except for fat percentage, the other estimations are quite similar
considering the differences between the two datasets.</p>
        <p>The present results compared to other studies, demonstrate a tendency towards
lower estimated fat and fluctuating muscle weights. Variable experimental designs and
population parameters among studies complicate safe assumptions. Lack of dissection
data directly related to the present dataset does not allow the proper validation of
results.
Carcass Traits
beef</p>
        <p>Means of fat and muscle weight of dissected sheep carcasses are presented in Table
4. Mean carcass weights for each live weight category are similar between the two
datasets; percentage change of mean CT-estimated values compared to dissection data
varied from 1.71 to 4.53% by absolute value. Regarding fat weight means, slight
differences were observed (percentage change: 3.24 – 6.23% by absolute value),
except for light carcasses (25% of adult weight). Muscle weight means were slightly
different for middleweight categories (35 and 50% of adult weight – percentage
change: 3.96 – 7.74% by absolute value). In contrast, percentage changes were larger
for heavier and lighter sheep (10.92 – 17.68% by absolute value). Generally,
CTestimated muscle and fat weights were close to dissection data regarding middleweight
carcasses. Fat weight estimation was more uniform compared to muscle (except for
light carcasses). A variety of factors, such as genetic differences and dissection quality,
may be causing the observed discrepancies.
beef
beef
sheep 25%
sheep 35%
sheep 50%
sheep
100%
sheep
total
fat weight
(g)
1159.69
1947.80
2991.47
8608.19
3676.79
fat weight
(g)</p>
        <p>This is the first study to implement CT as a carcass evaluation tool in Greece.
Preliminary results presented in this manuscript indicate potential in this field. Our
next tasks focus on the enrichment of the sample with more CT-scanned carcasses and
the inclusion of dissection data that will directly validate the results.</p>
        <p>Standardization of a carcass evaluation protocol, based on non-destructive methods,
can significantly change meat industry in Greece. Accurate and easy carcass quality
evaluation will facilitate high-quality meat production, competitive against imported
special cuts and able to reach high selling prices. Objective quality perception will
permit grading of different meat cuts, thus allowing for better produce capitalization
and waste minimization. This effort will form a value chain, rewarding quality meat
producers, creating bigger profit margins and meeting consumer demands.
Acknowledgments. This work was funded by GreQuM project (Code:
T1EDK05479), co-financed by Greece and EU through EPAnEK 2014-2020 and Partnership
Agreement 2014-2020.</p>
      </sec>
    </sec>
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