Vol-2930⫷ Vol-2931 ⫸Vol-2932
urn:nbn:de:0074-2931-2

Copyright © 2019 for the individual papers by the papers' authors. Copyright © 2021 for the volume as a collection by its editors. This volume and its papers are published under the Creative Commons License Attribution 4.0 International ( CC BY 4.0 ) .

ICBO 2019
International Conference on Biomedical Ontology 2019

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019)

Buffalo, New York, USA, July 30 – August 2, 2019 .

Edited by

Alexander D. Diehl *
William D. Duncan
Gloria Sanso *

* University at Buffalo Department of Biomedical Informatics
** Lawrence Berkeley National Laboratory Berkeley Bioinformatics Open-source Projects (BBOP)
*** University at Buffalo Department of Philosophy

Table of Contents

Preface
Summary: There were 53 papers submitted for peer-review to this event. Of these, 43 were accepted for this volume: 19 full papers, 23 poster abstracts, and 1 software demonstration extended abstract.

Full Papers

TXPO: A Toxic Process Ontology for Better Understanding of Drug-Induced Liver Injury A.1-8
Yuki Yamagata , Yoshinobu Igarashi , Noriyuki Nakatsu , Hiroshi Yamada
Ontology as Product-Service System: Lessons Learned from GO, BFO and DOLCE B.1-9
Barry Smith
Representing Causation: A Dispositional Perspective C.1-8
Fumiaki Toyoshima
Roles and Their Siblings in Basic Formal Ontology D.1-9
Fumiaki Toyoshima
Wordified Ontologies: Evaluating a Novel Paradigm for Ontology Editing E.1-7
Aisha Blfgeh , Phillip Lord
Comparing the Representation of Medicinal Products in RxNorm and SNOMED CT - Consequences on interoperability F.1-6
Jean Noel Nikiema , Olivier Bodenreider
A Classification of Instructions in Drug Prescriptions and Pharmacist Documents G.1-7
Adrien Barton , Paul Fabry , Jean-François Ethier
ICEO: a Biological Ontology for Representing and Analyzing the Bacterial Integrative and Conjugative Element H.1-10
Meng Liu , Hong-Yu Ou , Yongqun He
Foundation for a Realist Ontology of Cognitive Processes I.1-8
David Kasmier , David Limbaugh , Barry Smith
Mental Capabilities J.1-7
Eric Merrell , David Limbaugh , Alex Anderson , Barry Smith
Warranted Diagnosis K.1-10
David Limbaugh , David Kasmier , Werner Ceusters , Barry Smith
A Collaborative, Realism-Based, Electronic Healthcare Graph: Public Data, Common Data Models, and Practical Instantiation L.1-10
Mark A. Miller , Christian J. Stoeckert Jr.
Foundations for a Realism-based Drug Repurposing Ontology M.1-8
James Schuler , William Mangione , Ram Samudrala , Werner Ceusters
ICDO: Ontological Representation of the International Classification of Diseases (ICD) and its Application in English and Chinese Healthy Data Standardization N.1-1O
Ling Wan , Edison Ong , Yongqun He
The Ontology of Physics for Biology - A Companion to Basic Formal Ontology O.1-9
Daniel L. Cook , John H. Gennari , Maxwell L. Neal
Early steps of an Ontology for Magnetic Resonance Imaging: MRIO P.1-5
Lucas M. Serra , Michael G. Dwyer , William D. Duncan , Alexander D. Diehl
Visual Representation for Knowledge Representation: Graphics Libraries to Support Anatomy Terminologies and Ontologies Q.1-9
Melissa Clarkson , Steven Roggenkamp
OPMI: the Ontology of Precision Medicine and Investigation and its Support for Clinical Data and Metadata Representation and Analysis R.1-10
Yongqun He , Edison Ong , Jennifer Schaub , Frederick Dowd , John F. O'Toole , Anastasios Siapos , Christian Reich , Sarah Seager , Ling Wan , Hong Yu , Jie Zheng , Christian Stoeckert , Xiaolin Yang , Sheng Yang , Becky Steck , Christopher Park , Laura Barisoni , Matthias Kretzler , Jonathan Himmelfarb , Ravi Iyengar1 , Sean D. Mooney
Building a Shared Ontology Use Patterns Repository S.1-7
Jonathan P. Bona , Joseph Utecht , Sarah Bost , Corey J. Hayes , Mathias Brochhausen

Poster Abstracts and Software Demos

Ontology-based Semantic Mapping of Adverse Outcome Pathways T.1
Rong-Lin Wang
Integrating and Maintaining OMIM Cross-references in the Disease Ontology U.1-2
Susan M Bello , Cynthia L Smith , Lynn M Schriml
Ontological Derivation of Mendeleev's Periodic Table of Chemical Elements V.1
Kaiyong Liu , Yongqun He
Alignment of the Ontology of Host-Microbiome Interactions (OHMI) High Level Terms with Existing OBO Ontologies W.1
Yongqun He , Jie Zheng , Anna Maria Masci , Jihad Obeid
Ontological Modeling of Two-Component Regulatory Systems X.1
Hsin-Hui Huang , Meng Liu , Yongqun He
Representation of Protein Aggregates in an Ontological Framework Y.1
Lauren Wishnie , Alexander Cox , Alexander Diehl
Towards an Ontology-Driven Machine Learning Approach to the Diagnosis Classification Problem in Autism Spectrum Disorder Z.1
Fumiaki Toyoshima
Where Does an Ontology Start? AA.1
Henriette Harmse , Melanie Courtot , Warren Read , Nico Matentzoglu , David Osumi-Sutherland , Simon Jupp
LABO: an Ontology for Laboratory Test Prescription and Reporting BB.1
Paul Fabry , Adrien Barton , Jean-François Ethier
OGG-Bac: Ontological Representation of Orthologous Bacterial Genes CC.1
Meng Liu , Hong-Yu Ou , Yongqun He
Reconstruction of Hierarchical Structures in a Thesaurus-based Ontology through Curation by Domain Experts DD.1
Tatsuya Kushida , Kouji Kozaki , Yasunori Yamamoto , Atsuko Yamaguchi , Takahiro Kawamura , Takako Nakagawa , Yuka Tateisi , Toshihisa Takagi
Ontolion: A Web-based Integrative Ontology Development Platform EE.1
Edison Ong , Yongqun He
Catalog for Ontologies Towards Semantic Integration Across Environmental Health Science Research Data FF.1
Resham Kulkarni , Mike Conway , Deep Patel , Maria Shatz , Stephanie Holmgren , Charles Schmitt
Mapping Data Annotated with the Minimum Information About BIobank data Sharing (MIABIS) 2.0 to the Ontology for Biobanking (OBIB) GG.1-2
Sarah Bost , Niina Eklund , Kaisa Silander , Jie Zheng , Christian J. Stoeckert , Mathias Brochhausen
Using Stases to Enrich Queries for When and Where Regulations Are in Force HH.1
Jonathan M. Vajda , J. Neil Otte , Cooper Stansbury , Frank J. Manion , Marcelline R. Harris , Cui Tao
OWLmaker: An Application for Generating OWL Files from Tabular Text II.1-3
Jie Zheng , John Judkins , Christian Stoeckert
Semantic Integration of Neuroinformatics Data in the Arkansas Image Enterprise System with Open Biomedical Ontologies JJ.1
Jonathan P. Bona , Aaron S. Kemp , Tracy Nolan , Linda Larson-Prior , Aparna Das , Tuhin Virmani , Lakshmi Pillai , Mathias Brochhausen , Fred Prior
NGBO: Introducing -omics Data into Biobanking Ontology KK.1
Dalia Alghamdi , Damion M. Dooley , Gurinder Gosal , Emma J. Griffiths , William W.L. Hsiao
An Ontology-Driven Web Platform for Publishing Data Specifications to Support Data Sharing LL.1
Damion M. Dooley , Ivan S. Gill , Emma J. Griffiths , William L. Hsiao
Opportunities for Ontologies in Medical Device Total Product Life Cycle (TPLC) Evaluation MM.1
Asiyah Yu Lin
Medical Action Ontology (MAxO) NN.1
Leigh C. Carmody , Xingmin A. Zhang , Nicole A. Vasilevsky , Chris J. Mungall , Nico Matentzoglu , Peter N. Robinson
Tibb-Med-Linking-Onto: Knowledge Representation of Linking Prophetic Medicine with Current Medical practices OO.1
Muna Al-Razgan , Salwa Ali , Sarah Mohamed Hassan , Asiyah Yu Lin
Tripartite Term Enrichment Analysis of Multiple Sclerosis Patient Reported Outcomes PP.1
Mackenzie T. Smith , Lauren M. Wishnie , William D. Duncan , Mark Jensen , Alexander D. Diehl
Biomedical Informatics Investigator QQ.1-5
Peter L. Elkin , Sarah Mullin , Sylvester Sakilay

2021-08-13: submitted by Alexander D. Diehl, metadata incl. bibliographic data published under Creative Commons CC0
2021-08-19 : published on CEUR Workshop Proceedings (CEUR-WS.org, ISSN 1613-0073) | valid HTML5 |