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  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Foundation for a Realist Ontology of Cognitive Processes</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>CUBRC</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff3">3</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Buffalo NY</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff3">3</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>David Kasmier</institution>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>Department of Biomedical Informatics, University at Buffalo</institution>
          ,
          <addr-line>Buffalo NY</addr-line>
          ,
          <country country="US">USA</country>
        </aff>
        <aff id="aff2">
          <label>2</label>
          <institution>Department of Philosophy, University at Buffalo</institution>
          ,
          <addr-line>Buffalo NY</addr-line>
          ,
          <country country="US">USA</country>
        </aff>
        <aff id="aff3">
          <label>3</label>
          <institution>Mental Process</institution>
          ,
          <addr-line>Mental Representation, Intentionality</addr-line>
        </aff>
        <aff id="aff4">
          <label>4</label>
          <institution>National Center for Ontological Research, University at Buffalo</institution>
          ,
          <addr-line>Buffalo NY</addr-line>
          ,
          <country country="US">USA</country>
        </aff>
      </contrib-group>
      <abstract>
        <p>What follows is a first step towards an ontology of conscious mental processes. We provide a theoretical foundation and characterization of conscious mental processes based on a realist theory of intentionality and using BFO as our top-level ontology. We distinguish three components of intentional mental process: character, directedness, and objective referent, and describe several features of the process character and directedness significant to defining and classifying mental processes. We arrive at the definition of representational mental process as a process that is the bringing into being, sustaining, modifying, or terminating of a mental representation. We conclude by outlining some benefits and applications of this approach.</p>
      </abstract>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>Introduction</title>
      <p>Contemporary cognitive science is a highly interdisciplinary
field which draws on a wide variety of heterogenous data,
ranging from neurology to the analysis of literary texts. A range
of ontologies have been developed with the goal of making
these data more easily discoverable and analyzable. Following
the principles and methodology of the OBO Foundry can
provide a means of integrating these different kinds of data
effectively by creating ontologies which are both orthogonal to
each other and also interoperable.</p>
      <p>
        Here we describe the foundations of cognitive process
ontologies such as the Mental Functioning Ontology (MF) and
its extensions (
        <xref ref-type="bibr" rid="ref1 ref2 ref3">1-3</xref>
        ). One unique feature of cognitive process
ontologies is that they can be of value also outside of the
sciences of cognition in applications in finance, medicine, and
intelligence analysis, where cognitive processes such as
planning, diagnosing, and problem-solving play an important
role (
        <xref ref-type="bibr" rid="ref4">4</xref>
        ). Successfully capturing cognitive process data in these
fields holds the promise of bringing improvements to the
management of data about cognitive practices and thereby
providing a new sort of starting point for machine-assisted
cognition approaches to artificial intelligence. It may also help
us find better ways of understanding evaluative, forensic,
diagnostic and other investigative practices (
        <xref ref-type="bibr" rid="ref5">5</xref>
        ).
      </p>
      <sec id="sec-1-1">
        <title>Current cognitive ontologies</title>
        <p>
          Work on cognitive ontologies has thus far focused on the needs
of the cognitive sciences and of the mental health domain. The
most direct and extensively developed and utilized ontologies
for this domain remain the Mental Functioning Ontology (MF)
and its modules the Emotion Ontology (MFOEM) and the
Mental Disease Ontology (MFODO), as well as the Cognitive
Atlas (
          <xref ref-type="bibr" rid="ref1">1</xref>
          ) (
          <xref ref-type="bibr" rid="ref2">2</xref>
          ) (
          <xref ref-type="bibr" rid="ref6">6</xref>
          ). The goal of these ontologies has been to build
frameworks for bridging data collected in different sorts of
cognitive and neurological studies, focusing on familiar types
of mental processes such as remembering, deciding, attending
on the one hand (
          <xref ref-type="bibr" rid="ref1">1</xref>
          ) (
          <xref ref-type="bibr" rid="ref7 ref8 ref9">7-9</xref>
          ) and on mental disease on the other (
          <xref ref-type="bibr" rid="ref3">3</xref>
          ).
        </p>
        <p>
          The need for ontologies in the cognitive domain is expressed by
Poldrack and Yarkoni as follows:
a search of PubMed reveals more than 1,800 papers whose title or
abstract includes the phrase “working memory task.” It may not
register to most of those authors that in using this term (rather
than a more descriptive term such as “Sternberg item recognition
task” or “delayed response task”), they are making a theoretical
claim, i.e. that the task in question provides a way to isolate a
specific mental process called “working memory’’ (
          <xref ref-type="bibr" rid="ref9">9</xref>
          ).
        </p>
        <p>
          Hastings, Frishkoff, et al. (
          <xref ref-type="bibr" rid="ref7">7</xref>
          ) have noted that recognition tests
and other similar tasks are used to operationalize the study of
mental processes. That is to say that they are used to study the
mental indirectly, by defining mental processes in terms of the
data by which they are measured. Thus, working memory is
studied through research on subjects’ responses to recently
presented stimuli; intelligence is studied through research on
the accuracy of responses to written questions; and volitional
decisions are studied through research on physical task
completion and recording.
        </p>
        <p>
          This practice is motivated by an assumption, widespread in the
neurological science community, according to which mental
phenomena are not readily observable while associated
behaviors are. The former are ‘subjective’. At the same time we
agree with (
          <xref ref-type="bibr" rid="ref7">7</xref>
          ) that indirect methods have certain shortcomings.
        </p>
        <p>
          For example, “operational definitions rely on particular
measurement methods, and these methods may not be sensitive
to all aspects of the phenomenon of interest, or may reflect
additional processes, e.g., so-called task demands” (
          <xref ref-type="bibr" rid="ref7">7</xref>
          ). To
avoid these shortcomings and improve the interpretation of test
Copyright © 2019 for this paper by its authors. Use permitted under Creative Commons License Attribution 4.0 International (CC BY 4.0).
results we require a way to characterize the mental domain
directly, which means independently of operationalizing
techniques and independently of any postulated reductions of
mental processes to neurological or physiological behavior.
        </p>
        <p>As in the practice of biological science generally, studies of
underlying mechanisms always begin with observations of
organisms and behaviors. This is because the latter are more
well understood. The same, we hold, is true of mental entities.</p>
        <p>Operationalization and other modeling techniques may be
useful and informative in some cases, but they both depend on
and are improved by an understanding of the initial phenomena
of interest. Part of the solution to both the bridging and
operationalization challenges is to provide a way to characterize
the mental as it is understood pre-theoretically in the sorts of
subjective experiences that give rise to inquiry into the mind in
the first place. What is needed for this sort of understanding is
a characterization of the sorts of mental processes one cites
when asked questions like “What were you thinking?”, “How
did you arrive at that diagnosis?”, or simply “How are you
feeling?” In so far as there are meaningful answers to these
questions, there are also cognitive processes which we are
describing when we give such answers. The reason there are
mental process data is because such processes are observable –
both directly through introspection (conscious self-awareness)
and also indirectly, through reports others provide of what they
observe through introspection. Such reports are readily
available and can, we believe, serve as a basis for an ontology
of mental processes.</p>
      </sec>
    </sec>
    <sec id="sec-2">
      <title>Methods</title>
      <sec id="sec-2-1">
        <title>The theory of intentionality as the starting point for an ontology of mental processes</title>
        <p>
          In the following we provide a theoretical foundation for a
characterization of mental processes based on a realist theory of
intentionality. This realist theory was employed already in
building the Mental Functioning Ontology (MF) as well as
providing a starting point for the current development of the
Cognitive Process Ontology (CPO) (
          <xref ref-type="bibr" rid="ref5">5</xref>
          ), but in the MF related
literature the theory itself remained implicit.
        </p>
        <p>
          We draw here specifically on the literature of what is called
realist phenomenology (
          <xref ref-type="bibr" rid="ref10 ref11 ref12 ref13 ref14 ref15 ref16">10–16</xref>
          ), which takes as its starting point
the two-part thesis that 1. the mental phenomenon we are most
evidently familiar with is our own conscious awareness and that
2. this conscious awareness bears the defining characteristic
that it is always consciousness-of one thing or another. If I look
through the window and become conscious of squirrels on the
lawn, then my consciousness is successfully directed toward
those very squirrels. A thought you might have just now of a
meeting you attended yesterday is about a meeting that
happened yesterday. As a picture is a picture of something and
a statement is a statement about something, so thinking is in
every case a thinking about something. (See Figure 1.)
This quality of consciousness has traditionally been called
‘intentionality’, though it is also sometimes referred to using the
terminology of ‘representations’, as when we say that an act of
consciousness has a certain ‘representational quality’ (
          <xref ref-type="bibr" rid="ref17">17</xref>
          ). In
more general parlance, intentionality is just what is conveyed
by the term ‘aboutness’. Aboutness, as we will show, is
complex and comes in different types.
        </p>
        <p>Mental Process</p>
        <p>(Perception)
Mental Process
(Remembering)
is_about
is_about</p>
        <p>Entity
(Squirrel)</p>
        <p>Entity
(Meeting)
Realism is a view about what entities exists and what our
knowledge of them consists in. Our approach to the mental is
called ‘direct realism’ and sometimes referred to as ‘common
sense realism’, which we characterize by the following
principles:
a. The types of entities and features of the real world are
much as we take them to be in common sense ordinary life
and our knowledge of those entities is augmented by
advances in scientific discovery.
b. Mental processes are the means by which we acquire
knowledge of, think about, feel towards, and act in
meaningful ways in relation to the real world.
c. We can and often do enjoy direct cognitive access to the
entities and features of the real world and these direct
cognitive relations are central to our ability to know reality.
d. The aboutness of mental processes is unrestricted in the
sense that it can relate to portions of reality of any type,
including any type of real entity or feature, including types
themselves and also including instances of these types and
combinations of types and instances.
e. Mental processes are natural processes and as such are
also parts of the natural world.</p>
        <p>These principles entail that our minds have access to a real
world of which we are a part. We can directly think about
realworld entities and features, as well as acquire knowledge of
portions of reality out there in the world. Direct realism rejects
views according to which we can access in our thoughts and
perceptions at best only inner mental entities such as sense data
or subjective appearances. It also rejects views according to
which the real world is made or constructed by the mental
processes that apprehend it.</p>
        <p>
          Direct realism does not entail that all intentional conscious
mental processes involve direct aboutness relations, nor that all
intentional conscious processes are always about some real
entity. However, following (
          <xref ref-type="bibr" rid="ref18">18</xref>
          ) we maintain that all such
nonveridical and non-relational mental aboutness is ultimately
dependent and derived in various ways from direct relational
aboutness to some portion of reality. The ways in which
intentional conscious mental processes can fail to relate to that
which they purport to be about is multifarious and is outside the
scope of this paper. For our analysis it is sufficient to point out
that mental processes have intentional qualities whether they
are direct, indirect, veridical, or non-veridical. Furthermore, we
note that intentional conscious mental processes can and often
do directly relate, that we are aware of and can locate these
cases, and that we can describe the features of mental processes
that make this possible when it does occur.
        </p>
      </sec>
      <sec id="sec-2-2">
        <title>Basic structure of intentional mental processes</title>
        <p>
          We restrict our discussion to intentional (henceforth
representational) mental processes of the sort we consciously
experience. We focus exclusively on non-pathological cases of
mental processes. We believe that, as in the case of anatomy so
also in the case of the ontology of the mental, disorders and
anomalies are best defined in terms of standard (or ‘canonical’)
cases (
          <xref ref-type="bibr" rid="ref19">19</xref>
          ).
        </p>
        <p>We begin with three general
representational mental processes.
observations
about</p>
        <sec id="sec-2-2-1">
          <title>1. They have a representational structure.</title>
        </sec>
        <sec id="sec-2-2-2">
          <title>2. This representational structure is complex. 3. This representational structure is tied to the portions of reality the corresponding mental processes are about in non-arbitrary ways.</title>
        </sec>
        <sec id="sec-2-2-3">
          <title>We discuss each of these in turn.</title>
          <p>
            Structure of a mental process
Three dimensions have traditionally been distinguished in the
relational structure of representational mental processes,
namely: character, representational directedness, and
objective referent (
            <xref ref-type="bibr" rid="ref11">11</xref>
            ) (
            <xref ref-type="bibr" rid="ref20">20</xref>
            ) (
            <xref ref-type="bibr" rid="ref21">21</xref>
            ).
          </p>
          <p>The character (or ‘mode’) of a representational mental process
is that feature by which process types such as judging, doubting,
supposing, inferring, hoping, desiring, and fearing are
distinguished from each other. Differences in character are
differences in the way an entity is consciously represented.
Representational mental processes are not mere cases of
aboutness; there is always some characteristic way each is about
something. Wondering whether Jim is ill, doubting that Jim is
ill, discovering that Jim is ill, and affirming that Jim is ill are
each about Jim in some specific way. In each case a distinct
characteristic manner of relating (wondering, doubting,
discovering, affirming) relates the experiencing subject to the
same portion of reality, namely, Jim and his illness.
The representational directedness (or ‘content’) of a mental
process is the qualitative way an entity is represented to be in
an experience. This quality is what gives a mental process its
aboutness to a particular entity as qualified in this or that way.
For example, it gives rise to the difference between thinking
about an airplane ticket as yours, or as lost, or as cancelled.
Mental processes of a single character type can involve a
different representational directedness. Thus, one might wonder
about the weather, wonder about your flight times, or wonder
about that parking spot at the airport. In each case the same
process character (wondering), is paired to a different
representational directedness: being “about the weather”,
“about your flight” or “about that parking spot”, respectively.
The difference between the character and representational
directedness is the difference between the manner in which you
bring something to mind, and the way that thing brought to
mind is represented to be.</p>
          <p>Character and directedness are mutually dependent parts of a
representational whole. A pairing of this sort is common to
many sorts of processes. For example, walking has both a
manner of walking (for example a certain gait or a limp) and a
direction of walking. An instance of one type can only exist
with an instance of the other as parts of a complex whole. This
relationship is illustrated in Figure 2.</p>
          <p>Mental Process</p>
          <p>Character
(as wondered)</p>
          <p>Directedness
(about weather)
is_about
The objective referent of a mental process is the entity or
portion of reality that a given thought is or is intended to be
about – for example the people, meetings, buildings, cars,
trucks, and so on that we consider in our thoughts or perceive
in our everyday experience of the world. The object of Jim’s
doubting, discovering, and affirming in the example above is
the actual person Jim and his actual illness. It is thus not what
some might call a concept of Jim or any other theoretical mental
entity; it is not a bundle of sense data; and it is not any sort of
image or representation of Jim.</p>
          <p>Representational structure is complex
The representational qualities involved in mental processes are
both internally complex, which means that they have multiple
parts standing in relations to each other, and externally
complex, which means that they are embedded in larger
complex wholes consisting inter alia of the representational
qualities of other distinct mental processes.</p>
          <p>Consider the experience E of wondering whether you turned the
stove off this morning. This experience is not simply about the
stove and its being on or off. Rather, your concern is complex
and includes representing (thinking about) the stove as your
stove, as an appliance, as persisting across time, as occupying a
certain physical location, as previously having been used by
you, as a valued object, as capable of being on and off, as having
a color, a size, a function, an associated fire risk, and so on.
Some of these will be in the front your attention and concern
(the on switch, the fire risk), others at the periphery (its cooking
function).</p>
          <p>Such qualities and relations belonging to (or associated by you
with) the stove are co-represented in the experience E, not just
concurrently, but in such a way as to form a unified whole of
which each co-representational quality is a part. Some of these
aboutness relations are illustrated in Figure 3. Each small arrow
signifies a relation of aboutness towards a part or feature of the
stove. Each is what we might call a ‘partial representation’
involved in the whole representational complex that is about
whether the stove is on. The large arrow signifies the aboutness
of the total representational structure of which the other
representational qualities are parts.
`
The representational complex with which you wonder about
your stove in E is not static and will vary across time. It is also
not the case that every person that wonders about your stove
represents it in the same way and with the same set of qualities.
However, some parts of this representational complex are
essential to any mental process of any person that would relate
to that very stove. For instance, your stove (and any stove) is
represented as a physical object; and were it not so represented,
the stove would fail entirely to be related to your thinking. You
would not in fact be thinking about the stove at all. A
representational quality directed to the material nature of
something like a stove is so fundamental to our thoughts about
physical objects that it normally goes unnoticed. Other parts are
accidental. For instance, if you sell your stove and no longer
represent it as one of your possessions, your thought can
nonetheless be related to, and be about, the same stove.
Additionally, mental processes do not occur in isolation. Every
representational complex arises in the context of other
representational qualities about not only the immediate object
of concern but of the representing subject and the environment
of this subject. Thus, your initial wondering takes place in
combination with processes of representing your current
environment, your bodily position and location, the obligations
and tasks you are currently fulfilling, the present passage of
time, the occurrences you just witnessed and the anticipated
occurrences just beginning, and much more.</p>
          <p>
            Horizon
This last-mentioned example points to another structural feature
of mental processes. The structure of every representational
mental process involves what phenomenologists have called its
‘horizon’, which extends outward both spatially and temporally
from the object or process in the foreground of the experience
(
            <xref ref-type="bibr" rid="ref22">22</xref>
            ). Our representational complexes are directed not only to
their target and its various parts and features as described above,
but also to the expected and anticipated parts, features,
relations, and actions of the target beyond what is currently
presented. There are many sorts of horizons corresponding to
the different contexts within which our mental processes
represent.
          </p>
          <p>For example, your stove, when you stand before it and perceive
it, is represented also as having parts and features that are not
wholly present to you (its inside, its backside, its weight, the
cable connecting it to the power supply, its dispositions, for
instance to cause a fire). They are co-represented as waiting, in
the background so to speak, for you to perceive should you turn
your attention to them. The directedness corresponding to the
parts and properties of an object that are co-represented but not
immediately present in the experience make up what can be
called the object’s ‘internal horizon’. There is also an ‘external
horizon’ of directedness towards the relations and anticipated
actions of an object of concern. This anticipatory structure can
be illustrated by our experience of processes unfolding in time.
The experience of witnessing the beginning of an action you are
familiar with, say the leap of a cat, co-represents the anticipated
path of flight and landing. The expected unfolding of the cat’s
action makes the experience to be about a leap from the very
start.</p>
          <p>There are also elements of the horizon that pertain to the context
of the occurrence of the mental process itself. Since mental
processes occur in the context of other concurrent mental
processes, what we might call a ‘subjective’ horizon extends
out to the anticipated further experiences of the conscious
subject herself. The horizon of a single representational mental
process involves representational qualities directed to other
potential experiences of other objective referents and other
mental processes. In the above example, the perception of the
leap of a cat includes the anticipation of its landing, but the
perceptual process also represents something about itself and its
own potential. It co-represents its own expected continuation,
and specifically a continuation that leads to the presentation of
the completion of the cat’s landing. The subjective horizon of a
perceptual experience also relates to the potential for further
perspectives. The directedness to the cat’s leap includes the
corepresentation of your perspective and its potential to change
with respect to that leap. For example, should the cat leap
behind a tree and just out of view, co-represented is a horizon
of potential adjustments to your perspective needed to get a
better view of the landing.</p>
          <p>
            The horizon of mental process can also include representations
of the mental processes of other persons (
            <xref ref-type="bibr" rid="ref22">22</xref>
            ). We see the world
not merely as we see it but also, potentially, as Jim, over there
on the other side of the room, would see it. Should we see Jim
looking with interest around a corner that occludes our view,
our perception has as a part of its horizonal content a
representation of Jim’s perspective. His action is seen as
including a perspective we ourselves could have should we go
over next to him and look for ourselves. This is part of what we
might call the ‘inter-subjective horizon’, consisting of those
familiar and expected mental features, processes, and behaviors
of other persons and other thinking organisms. For example,
Jim’s action is, in the normal case, perceived as motivated and
rational. His behavior of looking around a corner is an objective
referent whose horizon points to a motive, purpose, and
perspective that Jim bears, and that purpose, motive, and
perspective represented as something that we could, in
principle, possess.
A further central structural dimension of our experience is the
dimension of fulfillment. When we witness the completion of
the cat’s leap we experience a fulfillment of our initial
expectation. What had initially been mere anticipations of leap
and landing become filled by perceptual experiences of those
very leap and landing processes themselves.
          </p>
          <p>
            Should you go home and check on the stove you were
wondering about, the representational qualities of your
consciousness mental processes will continue to change. Yet
when you arrive home the stove will (in non-pathological cases)
be represented as the same stove as you wondered about earlier
in the day. Although new representations of the stove are
produced, they are not only about the same objective referent as
earlier wondered about, but they are specifically about the stove
“as” earlier wondered about, your new mental processes being
about your stove in its relation to your previous concern.
Finding that the stove is switched off may offer a sense of relief
– something it would not do if you had not been concerned to
check on it in the first place. For you to check on and verify
that the stove is in fact off (in the canonical case) involves you
yourself perceiving that the stove is off. This amounts to
perceptually representing the stove and finding it to be as it was
previously thought to be. In this process of verifying,
representational qualities belonging to the process of wondering
are brought into relation with the representational qualities and
objective referent of a process of perception. This bringing into
relation is a distinct higher-order process that is directed to both
the stove as wondered about and to the stove as perceived, and
through them represents a new situation: the stove’s being as it
was thought to be. The fulfillment of the wondering about the
stove by way of the perception of the stove is more than a
sequence or even a co-representation, but a unity, what has been
termed a ‘fusion’ of parts that represents a new object based on
these parts (
            <xref ref-type="bibr" rid="ref10">10</xref>
            ). This sense might be expressed with the
exclamation “Whew! The stove is off”.
          </p>
          <p>
            Through this new process the stove is represented not just as
being off, but also as related to another higher-level distinct
representation with its own distinct character; what might call
the apprehension of truth. A representation of this sort is
remarkable because it describes a case of knowledge
acquisition and belief formation not just about the stove (the
objective referent) but of a representational structure itself. The
process of wondering whether the stove was on or off is
represented as settled and the representational directedness
towards the stove’s being off is represented as correct or true.
This is something that neither mere wondering nor perception
nor the sequence of the two could ever result in on their own.
Simple perceptual validation and its twin, the process of
perceptual frustration form the basis also of scientific
observation and hence of all scientific evidence gathering (
            <xref ref-type="bibr" rid="ref10">10</xref>
            ).
Consider another example. When a dermatologist examines a
skin lesion for indications of a melanoma, she often intends to
make a determination whether a biopsy is warranted. But,
before this determination can be made an initial examination
directed toward the question of whether the patient’s lesion
bears the clinical phenotype of a melanoma will need to be
established. Her examination will typically be directed to
ascertaining the presence of those phenotypical features.
The examination process is a perceptual process that represents
the lesion along with a context of horizons. Her perceptual
examination will include, among other things, representations
making up
a. the intersubjective horizon of the patient (what to ask
them, how to communicate with them),
b. the internal horizon of the lesion (coloration, structural
features of the epidermis and dermoepidermal junction),
c. the subjective horizon of her potential to get a better view
(using a dermascope, moving a lighting source to fix color
and shadowing effects), and
d. the external horizon of relations (the age of the lesion,
the behavior of the patient, family history).
          </p>
          <p>As the examination proceeds the perceptual processes involved
will fulfill to various degrees these horizons, and while doing
so will also directly represent various features relevant to the
clinical phenotype of a melanoma. Should the features
perceptually represented fulfill the doctor’s initial
representation affirmatively, she will find the lesion to in fact
bear that phenotype. The initial question will represented as
settled and the representation questioned, that the lesion has the
phenotype of a melanoma, will be represented to be true.
The examination of these familiar cases of wondering and
examining illustrate both the structure and complexity of the
aboutness that is part of our everyday conscious experience.
Such complexity points to the difficulty of describing mental
processes. Whether for the sake of scientific research, therapy,
diagnosis, or even personal communication about drinks at
party next week, there is a potential for misidentification and
misinterpretation. Despite these difficulties, it is worth pointing
out that we know perfectly well what is intended when someone
tells us that they are wondering whether or not they left the
stove on. We know what they mean, and we know to some
degree what they are thinking about and how they are thinking
about it. We also know what sort of actions and experiences
(and what further representations) would settle their concern.
This is true in general. When we know what someone is
thinking about and how they are thinking about it, we know also
what portions of reality and what sorts of representations
directed to them would fulfill their intentions, satisfy their
desires, help to prove their statements true or false, motivate
their actions, or explain the meaning of their words. All of this
is due in large part to the sharing of a common real world to
which our thoughts are directed and to the shareable repertoire
of representational qualities that direct us to it.</p>
          <p>Representational qualities are tied to their respective objects
in non-arbitrary ways
Each mental process, in virtue of the representational qualities
instantiated within it, represents its target in regular and
distinctive ways according to its process type. Perceptual
processes represent the thing perceived to be both sensorially
present and to be causally responsible for the perceptual process
itself. A judgment represents some state of affairs as obtaining
or not obtaining (for example, that the stove is off, that the
dinner was cold). An emotion represents a thing or an event as
differentially valued, as dangerous (in fear) or sudden (in
surprise). An expectation represents something as not occurring
but as at the same time impending. These representational
quality types cannot be arbitrarily exchanged as they are tied to
the qualitative character that participates in each mental process
according to its type.</p>
          <p>The Emotion Ontology (MFOEM) makes use of this
relationship between the representational quality types and
mental process types. Consider the MFOEM definition of the
emotion process of fear.</p>
          <p>Fear =def. An activated, aversive emotion that motivates
attempts to cope with events that provide threats to the
survival or well-being of organisms. Characterized by
feelings of threat and impending doom, and by an urge to
get out of the situation.</p>
          <p>The representational qualities associated with specific types of
emotion processes are captured in MFOEM under ‘appraisal’.
The emotion process of fear has as a part the ‘appraisal of
dangerousness’ defined as follows.</p>
          <p>Appraisal of Dangerousness =def. An appraisal that
represents an evaluation that an object or situation is
dangerous to the person (MFOEM).</p>
          <p>The emotion process of fearing thus essentially involves the
quality of representing an object or situation as being dangerous
to the fearing agent. If someone were to appraise an object or
event to be safe and secure they could not be said to be afraid
of it. Similar principles apply also to the behavioral and
physiological dimensions of emotion. Thus, the
representational qualities of fear go hand in hand, for example
with an increase in heart and breathing rate, increased muscle
tension, and piloerection (goose bumps), to name a few.
In cases where the behavioral, affective, and other
physiological experiences that are normal for the fearing
experience are present without the representational qualities
characteristic of fear, we would regard the person to be
suffering a disorder.</p>
          <p>We can enhance the MFOEM definition of ‘fear’ by noting that
there are representational qualities expressed in the definition
but currently couched in terms of feelings. MFOEM adds to the
definition of ‘fear’ the comment that it is “characterized by
feelings of threat and impending doom …”. Here the term
‘feelings’, is best understood to imply that the agent is
representing something to be threatening, impending, and
dooming. MFOEM does not have a term for ‘feeling of threat’
or ‘feeling of impending doom’ and ‘feeling’ itself is defined as
follows:</p>
          <p>Feeling =def. The subjective emotional feeling is that (fiat)
part of the emotion process by which the organism
experiences its own emotion.</p>
          <p>While the subjective emotional feelings involved in fear would
conform to the above definition and would include at least the
feeling of fear and quite possibly other related feelings of dread
or terror, there are also associated representations of
dangerousness that include as a part not the feelings but the
representational directedness to threat and impending doom.
The description of these representational qualities can be
extended along the lines discussed above. We add to this
description that fear, in the normal case, includes
corepresentations of the presence of a potential and expected
harm, such that there is an anticipation of the imminent
realization of that harm, and also that the feared thing itself is
represented as something that adversely affects conditions and
possibilities that the organism deems valuable and important.
Being struck with the fear that your laptop containing important
work may be irrevocably broken has as a part the conscious
representational directedness to the threatening condition of the
damaged laptop as well as the impending doom that a
permanent loss would entail. Of course, if nothing in the laptop
is of sufficiently serious value, then these representations would
normally not arise and neither would the emotion of fear.
Objective Referent
We have thus far addressed the role of the objective referent in
this discussion, only briefly, with respect to its place in the
representational relation and its role in the processes of
fulfillment. Representational qualities, however, are themselves
to a great deal dependent on and determined by the nature of the
entities they are about. An aboutness directed to a color could
not be directed to sound, and an aboutness directed to a person
could not also be directed to the number five. Each entity type
determines the ways its instances can be both represented and
known (for example, sounds are heard, colors seen, equations
calculated). Each entity type also limits the ways its instances
can be represented and known. These are not accidental
relationships and there is a remarkable isomorphism between
what sorts of things exists and how those things are related to
conscious mental processes. Were it not the case, then any sort
of entity with any set of features, could be represented by any
sort of mental process with any set of features. To the contrary,
sounds cannot be premises in deductions, colors cannot be
known through a process of counting, and equations cannot be
found as spatially extended objects orbiting the earth.</p>
        </sec>
      </sec>
      <sec id="sec-2-3">
        <title>Towards a foundation for the Cognitive Process Ontology (CPO)</title>
        <p>With this account in hand, we now turn to the ontological
representation of mental processes using Basic Formal
Ontology (BFO) as our top-level ontology.</p>
        <p>We limit ourselves to representational mental processes of a
sort that are experienced consciously and are basic to our shared
mental lives and to our shared mental vocabulary. Trivially,
mental processes are a type of BFO: process. Process in BFO is
a very broad term, but comprehends inter alia the coming into
being, sustaining, modifying, or passing away of a quality or
qualities.</p>
        <p>
          A quality in BFO is a Specifically Dependent Continuant (SDC)
that inheres in some independent continuant (IC). In the case of
representational mental qualities, the relevant independent
continuant is the cognitive system or relevant parts thereof of a
conscious organism. When I am thinking about something,
representational qualities inhere in the relevant parts of my
cognitive system, and correspondingly, those parts of my
cognitive system bear the representational qualities. In this way
my thinking processes relate me, by way of my cognitive
system, to the entities I think about. (See Figure 4.)
Consequently, mental processes are changes in qualities borne
by an organism’s cognitive system. Following (
          <xref ref-type="bibr" rid="ref18">18</xref>
          ) we define
‘mental quality’ as follows:
        </p>
        <p>Mental Quality =def. Quality which specifically depends
on an anatomical structure in the cognitive system of an
organism.</p>
        <p>Throughout the occurrence of a mental process, the cognitive
system of an organism participates in the process by bearing
the mental qualities that come into being, endure, change, or
pass away. The qualities themselves participate in the process
as those entities that are formed, sustained, modified, or
destroyed by the process. We term the whole qualitative
structure of representational mental qualities a ‘mental
representation’ and define ‘representation’ and ‘mental
representation’, as follows:</p>
        <p>Representation =def. Quality which is about or is intended
to be about a portion of reality.</p>
        <p>Mental Representation =def. Representation which is a
mental quality.</p>
        <p>We can now clarify talk of mental processes and their
aboutness. Mental processes have aboutness only derivatively;
their aboutness is due to the representational qualities that are
involved as participants in those processes. Aboutness does not
inhere in a process but in the thinker as she is related to the
target (some entity or portion of reality) that is being thought
about. The conscious processes of a cognitive system, as we
experience and communicate about them, are changes in the
vast qualitative structures of aboutness we consciously live
through. Following our definitions, representational mental
processes thus consist in the coming into being, sustaining,
modifying, or passing away of mental representations of
various complexity and duration.</p>
        <p>
          Representational Mental Process =def. process that is the
bringing into being, sustaining, modifying, or terminating
a mental representation. (
          <xref ref-type="bibr" rid="ref5">5</xref>
          )
The basic structural components of a mental representation are
its representational character and representational directedness
defined as follows:
        </p>
        <p>Representational Character =def. a quality that is part of a
mental representation and determines the way in which that
representation is about its objective referent.</p>
        <p>Representational Directedness =def. a quality that is part of
a mental representation and determines the way its
objective referent is represented as being.</p>
        <p>Character</p>
        <p>has_part
Directedness
has_part</p>
        <p>is_a</p>
        <p>Mental
Representation
(Representational</p>
        <p>Quality)
inheres_in</p>
        <p>Cognitive</p>
        <p>System
has_part</p>
        <p>Agent
participates_in
‘Representational Mental Process’
=def. Process that is the bringing into being,
sustaining, modifying, or terminating a mental
representation.</p>
      </sec>
    </sec>
    <sec id="sec-3">
      <title>Discussion</title>
      <p>Consider now the difference between the characters of
processes of fearing, questioning, imagining, and regretting. An
adult under suitable conditions is able to distinguish between
these on the basis of the representational relation each has to its
object. A question process represents its object as yet to be
determined, an imaginative process as unreal, a regret as past.
An ordinary adult, similarly, cannot fear what she represents as
past or regret what she represents as unreal. These examples are
not intended to provide necessary and sufficient conditions for
each process type but rather to point to the sorts of ties that hold
between character, representational content, and objective
referent. As a matter of principle descriptions of such ties, when
made explicit, often appear as more than obvious to anyone that
has feared, questioned, imagined, or regretted.</p>
      <p>When mental process data are collected whether for cognitive
research experiments, cognitive and behavioral therapies,
psychiatric evaluation, correlations in neuro imaging studies, or
for review and evaluation of diagnostic and other analytical
practices, then, one important organizational dimension of these
data relates to the coming into being, changing, and passing
away of complexes of mental representations.</p>
      <sec id="sec-3-1">
        <title>Potential difficulties and further research.</title>
        <p>Although cognitive processes have been discussed in the above
as if they were discrete events, our conscious lived experience
is much more like a continuous flow. Divisions into wondering,
doubting, perceiving, and so forth, although not arbitrary,
delineate events that of their own character do not exist in
isolation but are rather fused together in much larger complexes
of intentional representational structures. This fact does not,
however, remove the significance of the distinctions we have
drawn, but it makes isolating and studying individual processes
all the more challenging. Nevertheless, the types instantiated by
such processes are important for at least three reasons: 1. They
are real. Neither the dependence nor the continuous nature of
an entity makes the entity any less real (compare colors, sounds,
lexical typography, state borders). 2. Essential distinguishing
characteristics and law-like axioms pertain to these entities, as
the many examples introduced above demonstrate. 3. We speak
easily and naturally of hoping, desiring, reasoning, evaluating,
knowing, and these terms are essential ingredients in any
ontology or cognitive science that hopes to communicate about
the portions of reality that form its own subject matter.</p>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>Address for correspondence</title>
      <p>David Kasmier, National Center for Ontological Research
(NCOR), University at Buffalo. davekasmier@gmail.com.</p>
    </sec>
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