Clark K, et al. The Cancer Imaging Archive (TCIA): Maintaining and operating a public information repository. Journal of digital imaging. Semantic Integration of Neuroinformatics Data in the Arkansas Image Enterprise System with Open Biomedical Ontologies Jonathan P. Bona 0 1 2 5 Aaron S. Kemp 0 1 2 4 5 Tracy Nolan 0 1 2 5 Linda Larson-Prior 0 1 2 3 4 5 Aparna Das 0 1 4 5 Tuhin Virmani 0 1 3 5 Lakshmi Pillai 0 1 3 5 Mathias Brochhausen 0 1 2 5 Fred Prior 0 1 2 5 1. Bona JP, et al. Ontology-Enhanced Representations of Nonimage Data in The Cancer Imaging Archive. Proceedings of the International Conference on Biomedical Ontology 2018. CEUR Workshop Proceedings , Corvallis, OR , USA 3. Cox AP, et al. Measuring cognitive functions: Hurdles in the development of the neuropsychological testing ontology. Proceedings of the International Conference on Biomedical Ontology. CEUR Workshop Proceedings , Montreal , Canada Department of Biomedical Informatics, University of Arkansas for Medical Sciences , Little Rock, AR , USA Department of Neurology, University of Arkansas for Medical Sciences , Little Rock, AR , USA Departnent of Psychiatry, University of Arkansas for Medical Sciences , Little Rock, AR , USA from the National Cancer Institute, National Institutes of Health under Contract No. HHSN261200800001E , subcontract 16X011 and grants: U01CA187013, U24CA215109, 3U24CA215109- 02S1 2013 26 6

The Arkansas Image Enterprise System (ARIES) pilot project brings together data from three collaborating investigative teams in an effort to identify common pathways of neurodegeneration. These datasets include images and imagederived features, motor assessments, cognitive assessments, clinical rating scales, demographics, and clinical data. ARIES achieves semantic integration of its diverse datasets using representations based on axiomatically-rich ontologies.

 Neuroinformatics semantic integration imaging -

The Arkansas Image Enterprise System (ARIES) is an instantiation of the Platform for Imaging in Precision Medicine (PRISM) (1). PRISM containerizes The Cancer Image Archive (TCIA) (2) technology stack, streamlining its deployment, and incorporating new tools to organize and analyze data. PRISM’s development improves TCIA's ability to manage and analyze integrated datasets. ARIES is both a testbed for PRISM and an institutional research data management resource. It demonstrates the capabilities of the PRISM infrastructure’s semantic representation approach by integrating diverse data relevant to research questions about neurodegenerative disease. The ARIES pilot project combines data from three collaborating investigative teams in an effort to identify common pathways of neurodegeneration. These data come from three unique study cohorts diagnosed with Parkinson’s disease (PD), Mild Cognitive Impairment (MCI), or Cancer-Related Cognitive Impairment (CRCI). The datasets include images and imagederived features, motor assessments, cognitive assessments, clinical rating scales, demographics, and clinical data. ARIES integrates and manages these data and associated metadata using a shared representation that accounts for both explicit and implicit connections among the data across the source data sets. This approach removes obstacles to 1) working with different source representations for the same type of information; 2) connecting and interpreting different types of data that are about the same phenomena; and 3) combining diverse data sets that are about the same individuals. The result is deidentified, curated datasets for third-party exploration ARIES achieves semantic integration of diverse datasets by using representations based on axiomatically-rich ontologies to construct a knowledge graph that combines instance data from these unique study cohorts into a shared semantic representation. This is stored in a triple store database that supports reasoning over and querying the integrated data.

We represent the entities that ARIES data collections are about using OBO Foundry resources, taking advantage of the consistent representational strategy underlying these resources. This poster reports on ongoing work on our pilot test case linking image-derived measures of hippocampal volumes to a diverse set of cognitive assessment results. We use the Neuropsychological Testing Ontology (3), among others, to represent, combine, and explore study subjects’ cognitive assessment results with imaging and image derived measures. Acknowledgements