CEUR-WS
Identifier
http://ceur-ws.org/Vol-3127/
Volume
Vol-3127
URN
urn:nbn:de:0074-3127-1
Language
eng
License
CC BY Copyright © 2022 for the individual papers by the papers' authors. Copyright © 2022 for the volume as a collection by its editors. This volume and its papers are published under the Creative Commons License Attribution 4.0 International ( CC BY 4.0 ) .

SWAT4HCLS 2022 Semantic Web Applications and Tools for Health Care and Life Sciences

Event
13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences
Location
Virtual Event, Leiden, Netherlands
Date
to
Edited by
Katy Wolstencroft 1
Andrea Splendiani 2
M. Scott Marshall 3
Chris Baker 4
Andra Waagmeester 5
Marco Roos 6
Rutger Vos 7
Rianne Fijten 8
Leyla Jael Castro 9
  • 1 LIACS, Leiden University , The Netherlands
  • 2 Novartis , Switzerland
  • 3 Annalect , The Netherlands
  • 4 University of New Brunswick , Canada
  • 5 Micelio, Antwerp , Belgium
  • 6 Leiden University Medical Centre , The Netherlands
  • 7 Naturalis , The Netherlands
  • 8 Maastro , The Netherlands
  • 9 ZB MED , Germany

Table of Contents

  1. Preface

    Summary: There were 26 papers submitted for peer-review to this workshop. Out of these, 15 papers were accepted for this volume.

  2. Creating and Exploiting the Intrinsically Disordered Protein Knowledge Graph (IDP-KG)
    Pages
    1 – 10
    Authors
    Alasdair J. G. Gray
    Petros Papadopoulos
    Imran Asif
    Ivan Mičetić
    András Hatos
  3. The SPHN Ecosystem towards FAIR Data
    Pages
    11 – 18
    Authors
    Sabine Österle
    Vasundra Touré
    Katrin Crameri
  4. Automated Identification of Food Substitutions Using Knowledge Graph Embeddings
    Pages
    19 – 28
    Authors
    Julie Loesch
    Louis Meeckers
    Ilse van Lier
    Alie de Boer
    Michel Dumontier
    Remzi Celebi
  5. Phenopackets for the Semantic Web
    Pages
    29 – 33
    Authors
    Rajaram Kaliyaperumal
    Gurnoor Singh
    Núria Queralt-Rosinach
    Jumamurat Bayjanov
    Peter-Bram 't Hoen
    Marco Roos
  6. The Use of Foundational Ontologies in Bioinformatics
    Pages
    34 – 43
    Authors
    César Henrique Bernabé
    Núria Queralt-Rosinach
    Vítor E. Silva Souza
    Luiz Olavo Bonino da Silva Santos
    Annika Jacobsen
    Barend Mons
    Marco Roos
  7. A Comprehensive Comparison of Automated FAIRness Evaluation Tools
    Pages
    44 – 53
    Authors
    Chang Sun
    Vincent Emonet
    Michel Dumontier
  8. FAIR and GDPR Compliant Population Health Data Generation, Processing and Analytics
    Pages
    54 – 63
    Authors
    Ruduan Plug
    Yan Liang
    Mariam Basajja
    Aliya Aktau
    Putu Hadi Purnama Jati
    Samson Yohannes Amare
    Getu Tadele Taye
    Mouhamad Mpezamihigo
    Francisca Oladipo
    Mirjam van Reisen
  9. Nanotate: Semantically Annotating Experimental Protocols with Nanopublications
    Pages
    64 – 73
    Authors
    Olga Giraldo
    Miguel Ruano
    Robin A. Richardson
    Remzi Celebi
    Michel Dumontier
    Tobias Kuhn
  10. Glycan Semantic Model Applications in Substructure Search
    Pages
    74 – 81
    Authors
    Vincenzo Daponte
    Catherine Hayes
    Julien Mariethoz
    Frederique Lisacek
  11. Implementing a New FHIR RDF Specification for Semantic Clinical Data Using a JSON-LD-based Approach
    Pages
    82 – 86
    Authors
    Deepak K. Sharma
    Eric Prud’hommeaux
    David Booth
    Kevin J. Peterson
    Daniel J. Stone
    Harold Solbrig
    Guohui Xiao
    Emily Pfaff
    Guoqian Jiang
  12. A Survey of Multilingual OWL Ontologies in BioPortal
    Pages
    87 – 96
    Authors
    Frances Gillis-Webber
    C. Maria Keet
  13. Using SPARQL to Unify Queries over Data, Ontologies, and Machine Learning Models in the PhenomeBrowser Knowledgebase
    Pages
    97 – 102
    Authors
    Ali Syed
    Şenay Kafkas
    Maxat Kulmanov
    Robert Hoehndorf
  14. ProtSTonKGs: A Sophisticated Transformer Trained on Protein Sequences, Text, and Knowledge Graphs
    Pages
    103 – 107
    Authors
    Helena Balabin
    Charles Tapley Hoyt
    Benjamin M. Gyori
    John Bachman
    Alpha Tom Kodamullil
    Martin Hofmann-Apitius
    Daniel Domingo-Fernández
  15. MetaMap versus BERT Models with Explainable Active Learning: Ontology-Based Experiments with Prior Knowledge for COVID-19
    Pages
    108 – 117
    Authors
    Mercedes Arguello-Casteleiro
    Chloe Henson
    Nava Maroto
    Saihong Li
    Julio Des-Diz
    Maria Jesus Fernandez-Prieto
    Simon Peters
    Timothy Furmston
    Carlos Sevillano-Torrado
    Diego Maseda-Fernandez
    Manoj Kulshrestha
    John Keane
    Robert Stevens
    Chris Wroe
  16. Features of a FAIR Vocabulary
    Pages
    118 – 148
    Authors
    Fuqi Xu
    Nick Juty
    Carole Goble
    Simon Jupp
    Helen Parkinson
    Mélanie Courtot

We offer a BibTeX file for citing papers of this workshop from LaTeX.