SWAT4HCLS 2023 Semantic Web Applications and Tools for Health Care and Life Sciences 2023
- Event
- 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023)
- Location
- Basel, Switzerland
- Date
- to
Table of Contents
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Preface
Summary: There were 22 papers submitted for peer-review to this workshop. Out of these, 14 papers were accepted for this volume.
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Using BPMN for medical guidelines that integrate with FHIR-RDF
- Pages
- 1 – 10
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Privacy-Preserving Dashboard for F.A.I.R Head and Neck Cancer data supporting multi-centered
collaborations
- Pages
- 11 – 21
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Generating Knowledge Graph Based Explanations for Drug Repurposing Predictions
- Pages
- 22 – 31
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Resource Description Framework (RDF) Modeling of Named Entity Co-occurrences Derived
from Biomedical Literature in the PubChemRDF
- Pages
- 32 – 41
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FSO: Food Safety Monitoring Ontology
- Pages
- 42 – 51
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Attention for Multi-Ontology Concept Recognition
- Pages
- 52 – 61
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BiodivBERT: a Pre-Trained Language Model for the Biodiversity Domain
- Pages
- 62 – 71
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FAIR Functional Enrichment: Assessing and Modelling Provenance in Omics Results
- Pages
- 72 – 81
Short Papers
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Predicting missing annotations in Gene Ontology with Knowledge Graph Embeddings and
True Path Rule
- Pages
- 82 – 86
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Ontology-based expansion of virtual gene panels to improve diagnostic efficiency for
rare genetic diseases
- Pages
- 87 – 91
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Fine-Grained Named Entities for Corona News
- Pages
- 92 – 97
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Document-to-document relevance assessment for TREC Genomics Track 2005
- Pages
- 98 – 101
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Decentralised semantics in distributed health data ecosystems: Harmonising quantitative
data from medical devices for improved insights-driven applications
- Pages
- 102 – 106
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Surveyed common data access policies preferences amongst European Reference Networks
- Pages
- 107 – 111
Poster Papers
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Towards a Systems Pharmacology Ontology: the use of state-machines paradigm
- Pages
- 112 – 113
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The FAIR Data Point Populator: collaborative FAIRification and population of FAIR
Data Points
- Pages
- 114 – 115
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Making expert curated knowledge graphs FAIR
- Pages
- 116 – 117
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Towards the use of semantic rules to prioritize patient input requests in ePRO systems
- Pages
- 118 – 119
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To build densely connected Web of RDF data
- Pages
- 120 – 121
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Contributions to the reuse and reproducibility of computational biology models
- Pages
- 122 – 123
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Comparative analysis of protein function text-based embeddings and their applicability
to prediction tasks
- Pages
- 124 – 125
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Genome Variation Ontology for annotation of complex structural variations
- Pages
- 126 – 127
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Developing a semantic event search engine for biomedical events
- Pages
- 128 – 129
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FAIRification and semantic modelling for Duchenne and Becker Muscular Dystrophy rare
diseases
- Pages
- 130 – 132
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MeDaX project plan: How to sustainably improve biomedical (research) data management
- Pages
- 133 – 134
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Towards Semantic Modeling of Patient Trajectories for Rehabilitation of Osteoarthritis
- Pages
- 135 – 136
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NFDI4BIOIMAGE: Perspective for a national bioimaging standard
- Pages
- 137 – 138
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First Steps Towards the FAIRification of the DZD CORE DATASET at the German Center
for Diabetes Research
- Pages
- 139 – 140
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An ontology for Age-Related Macular Degeneration using ophthalmologists and language
models
- Pages
- 141 – 142
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A Semantic Representation of the NFDI4Health Metadata Schema Utilizing the CEDAR Workbench
- Pages
- 143 – 144
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A metadata analysis for machine-actionable Software Management Plans
- Pages
- 145 – 146
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Structured review on Huntington's disease iron hypothesis
- Pages
- 147 – 148
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Text mining genome-wide association study literature
- Pages
- 149 – 150
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Updating the CEMO ontology for future epidemiological challenges
- Pages
- 151 – 152
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Visualisation and Exploration of Linked Data Using Virtual Reality - a preview of
Graph2VR
- Pages
- 153 – 154
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Multilabel-classification task for Medline abstracts
- Pages
- 155 – 156
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Experiences from compiling a FAIR survey in the German Network University Medicine
- Pages
- 157 – 158
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OntoClue, a framework to compare vector-based approaches for document relatedness
using the RELISH corpus
- Pages
- 159 – 160
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Text-based phenotyping with Semantic Deep Learning: setting up experiments for women’s
health
- Pages
- 161 – 162
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An Explainable Intervention Prediction for Trauma Patients
- Pages
- 163 – 164
Demonstrations
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FHIR-Ontop-OMOP: Querying OMOP clinical databases as FHIR-compliant Clinical Knowledge
Graphs
- Pages
- 165 – 166
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AgroLD: a Knowledge Graph for the Plant Sciences
- Pages
- 167 – 168
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Analyze Decentralized Personal Health Data Using Solid, Digital Consent, and Federated
Learning
- Pages
- 169 – 170
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Managing food and microbiome studies data using Fairspace, a flexible and FAIR data
management platform
- Pages
- 171 – 172
Data-In-Use Papers
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Towards predicting essential proteins via federated SPARQL queries
- Pages
- 173 – 174
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A federated query between neXtProt and OrthoDB retrieves 44 uncharacterized human
proteins highly expressed in the brain and conserved in Drosophila melanogaster
- Pages
- 175 – 176
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Data in use for Alzheimer disease study: combining gene expression, orthology, bioresource
and disease datasets
- Pages
- 177 – 178
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Linking glycan and protein data
- Pages
- 179 – 180
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UniProt, ChEBI and IDSM Sachem: exploring biologically relevant ligands
- Pages
- 181 – 183
We offer a BibTeX file for citing papers of this workshop from LaTeX.