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  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Digital Twins in Healthcare: A forefront for knowledge representation techniques</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Swarnendu Ghosh</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff1">1</xref>
          <xref ref-type="aff" rid="aff2">2</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>2nd Symposium on NLP for Social Good (NSG)</institution>
          ,
          <addr-line>25-26 April, 2024</addr-line>
          ,
          <institution>University of Liverpool</institution>
          ,
          <country country="UK">United Kingdom</country>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>IEM Centre of Excellence for Data Science</institution>
          ,
          <addr-line>Kolkata, WB</addr-line>
          ,
          <country country="IN">India</country>
        </aff>
        <aff id="aff2">
          <label>2</label>
          <institution>Institute of Engineering &amp; Management (UEM)</institution>
          ,
          <addr-line>Kolkata, WB</addr-line>
          ,
          <country country="IN">India</country>
        </aff>
      </contrib-group>
      <abstract>
        <p>Digital twins have recently gathered significant interest in the healthcare community. This concept promises to unlock various previously unavailable services such as remote monitoring, advanced visualization, simulation of medical procedures, predictive analytics, demographic studies, and so on. At present research in this area is localized and conducted independently. Thus, efective deployment of digital twins in healthcare is still a work in progress due to inconsistent data representation and isolated innovation without efective integration at large scale. Knowledge representation plays a vital role in structuring, integrating, and reasoning over heterogeneous healthcare data sources such as electronic health records, genomics data, clinical guidelines, reports, medical literature, and more. The process of digitization is relevant not only to patients but also to healthcare professionals, infrastructure facilities, devices, insurance providers, and even historical records. This work proposes to thoroughly highlight this research gap and the current initiatives addressing these issues. It aims to review and consolidate existing eforts in standardizing data structures for healthcare digital twins, with a focus on interoperability, representation and integration across diverse healthcare domains.</p>
      </abstract>
      <kwd-group>
        <kwd>eol&gt;Digital Twins</kwd>
        <kwd>Healthcare Informatics</kwd>
        <kwd>Knowledge Representation</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>1. Introduction</title>
      <p>
        The uncivilized human species have solely depended on their biological immunity and
behavioural traits for treating physical ailments[
        <xref ref-type="bibr" rid="ref1">1</xref>
        ]. The earliest civilizations started adopting
unorthodox practices to aid in the general well-being and lifestyle improvement. There have
been numerous records of herbal remedies, spiritual and yogic practices, and even primitive
surgical methods in ancient civilizations like the Egyptian, Indian, Greeks and so on [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ]. Around
the 15th century, the Renaissance period introduced several aspects of modern medicine such
as diagnosis, anatomical studies and various surgical tools. As time progressed each century
brought us new concepts such as the Germ theory[
        <xref ref-type="bibr" rid="ref3">3</xref>
        ] and introduction of anesthesia[
        <xref ref-type="bibr" rid="ref4">4</xref>
        ] in the
19th century and other advancements like vaccines[
        <xref ref-type="bibr" rid="ref5">5</xref>
        ], antibiotics[
        <xref ref-type="bibr" rid="ref6">6</xref>
        ], radiology[
        <xref ref-type="bibr" rid="ref7">7</xref>
        ], ECG[
        <xref ref-type="bibr" rid="ref8">8</xref>
        ] and
so on in the 20th century. This accelerated innovation has continued to increase the periphery
of modern medicine. With the dawn of the 21st century, the age of automation took over. With
immense advancement in machine learning, internet of things, 5G, cloud computing platforms,
healthcare informatics have taken a new turn[
        <xref ref-type="bibr" rid="ref9">9</xref>
        ]. Present eforts are being focused on the
automation of the diagnosis, robot assisted surgeries, remote clinical processing and more. The
complete mapping of the human genome[
        <xref ref-type="bibr" rid="ref10">10</xref>
        ] has led to a new era of precision medicine that
combines genomic and proteomic studies for drug design. These advancements have created
the hotbed for the emergence of the concept of digital twin.
Definition 1. A digital twin is an accurate electronic representation or model of something
that has physical existence created using real-world data and simulations to mimic its behavior,
characteristics, and functionalities
      </p>
      <p>
        The concept of digital twins is being adopted by several industries[
        <xref ref-type="bibr" rid="ref11">11</xref>
        ] such as defence,
transportation, manufacturing, urban planning, automobiles, e-commerce, environmental monitoring,
and last but not the least healthcare.
      </p>
      <p>
        Though several of previous studies have been conducted in this topic[
        <xref ref-type="bibr" rid="ref12 ref13 ref14">12, 13, 14</xref>
        ], we will
discuss the possibilities of integrating the digital twin ecosystem with the current healthcare
industry especially highlighting the role of knowledge representation. A hypothetical healthcare
ecosystem is described in fig. 1.
      </p>
    </sec>
    <sec id="sec-2">
      <title>2. Digital Twins in Healthcare: Scope, Target &amp; Purpose</title>
      <p>
        The healthcare industry has already started adopting the concept of digital twins in various
diferent ways. Till now the innovation has mostly been localized. The objective of this paper
is to propose a more global approach to make digital healthcare a reality. The applications of
digital twins in healthcare can be classified into several categories based on the application
scope, target areas and purpose that the digital twins would serve.
2.1. Scope
Digital twins is may be implemented at the level of a single patient[
        <xref ref-type="bibr" rid="ref15">15</xref>
        ], an entire organization[
        <xref ref-type="bibr" rid="ref16">16</xref>
        ]
or even a geographical area[
        <xref ref-type="bibr" rid="ref17">17</xref>
        ]. Each level of implementation serves diferent use cases and
application scenarios. A patient level twin may be developed by measuring physiological
parameters, gene sequencing, radiology scans, medical histories, psychometric profiles and so on.
At an organizational level, models of various organs, and biological processes can aid in running
simulations or providing training. Molecular modelling is often necessary for drug designs and
vaccine development. Furthermore various clinical infrastructures, services, equipment, etc.
can also have virtual counterparts to enable process simulations and optimization of various
clinical activities. Virtualization is not only limited to specific persons or organizations. They
may also span over geographical regions to aid in various types of demographic surveys, and
community based healthcare modelling.
      </p>
      <sec id="sec-2-1">
        <title>2.2. Target</title>
        <p>The next obvious aspect of digital twins is to figure out what components of the healthcare
industry can be represented using a digital twin.</p>
        <p>
          • Multiomics: Multiomics modelling[
          <xref ref-type="bibr" rid="ref18">18</xref>
          ] covers various aspects regarding the molecular
dynamics of the human body. The genetic sequence and its electronic representation can
be considered as a genetic twin of a person. This genetic profile may be used to prepare
personalized treatment plans. Other than that models of various bio-molecules allow us
to simulate molecular interactions. Prediction and 3D visualizations of protein structures
is a big application area in this regard.
• Drugs: Molecular interactions can also be used for designing candidate drugs[
          <xref ref-type="bibr" rid="ref19">19</xref>
          ]. Digital
twins of such molecules may be used to measure docking feasibility. This can be further
extended to create precision medicine that takes genetic variations into considerations.
• Diseases: Modelling genetic variants of disease[
          <xref ref-type="bibr" rid="ref20">20</xref>
          ] causing microorganisms is a
promising area to explore possible mutations and drug interactions or vaccine eficacy.
• Epidemics: Modelling mobility patterns of diseases[21] and various other environmental
factors that may trigger healthcare concerns leads to a better understanding of epidemics
and plan accordingly. Geographic twins of epidemic events can provide the platform for
planning containment zones and vaccination drives.
• Biological Systems: Various organs, and respective biological processes like digestion,
circulation, neural impulses can also have digital twins[22]. Generic models of these
organs or processes can be used for training purpose. Even patient specific models can
allow us to develop surgical or treatment plans by running simulations. Digital twins also
help in designing personalized prosthetics.
• Infrastructure: Even in administration we can have twins of healthcare facilities[23],
and personnel to optimize administration and services. Various clinical equipment and
devices can also have digital twins. These can be helpful in training and simulations.
Electronic Health Records can provide decision support for defining health policies and
insurance parameters.
        </p>
      </sec>
      <sec id="sec-2-2">
        <title>2.3. Purpose</title>
        <p>
          The final piece of the digital twin ecosystem is to define the purpose that is served by the twin.
We have already discussed about the various scopes and targets for digitization. These twins
would be useful in several scenarios.Digital twins may be used for training [24] of healthcare
personnel on new equipment or clinical procedures may carried out. Surgical simulations [25]
may be performed on patient specific twins of target organs. Demographic surveys allow us
to plan region specific healthcare services[ 26] and also create decision support systems for
epidemics and community healthcare. Past records may be used to forecast future outcomes[27]
of treatment protocols, health camps, and also anticipate maintenance needs and provide
supportive evidences for taking decisions. As discussed before, various vaccine[28] and drug
design rely on digital twins for simulating molecular interactions. Personalized medicine[
          <xref ref-type="bibr" rid="ref18">18</xref>
          ] is
also an application that consider genetic profile, medical history and lifestyle factors. Finally
healthcare institutions can use digital twins to optimize their services, and reduce costs.
        </p>
      </sec>
    </sec>
    <sec id="sec-3">
      <title>3. Holistic Healthcare Framework</title>
      <p>The proposed holistic healthcare framework is a hypothetical model that ideologically
establishes the potential of the digital twin industry. The objective of this study is to recognise the
challenges of integrating digital twins into the existing healthcare industry and to propose
essential steps for initiating a globally connected healthcare industry that can exploit modern
technologies such as deep learning, internet of things(IoT), 5G/6G communications and cloud
computing. But before we proceed we must understand that a digital twin is not a nuclear
computational module working in isolation. It is an ecosystem consisting of various
stakeholders such as patients, healthcare facilities, healthcare personnel, technology developers,
device manufacturers, regulatory bodies, ethics committees, cybersecurity service providers,
educational &amp; research institutions, financial support providers, government, advocacy groups
and more. It is built upon a versatile and robust technological stack [29]that interacts with
various external data repositories and under the supervision of ethics committees and regulatory
bodies.</p>
      <sec id="sec-3-1">
        <title>3.1. Technological Stack</title>
        <p>The necessary technological stack (as illustrated in fig. 2) for an ideal digital twin ecosystems
would have multiple functional modules. Obviously the ecosystem would be built on top of
the real world. This physical layer consists of the patients, healthcare professionals, medical
facilities, equipment, and other relevant institutions. The virtual world would start with the data
layer that would consist of the electronic data acquired from various sources such diagnostic
equipment, patient records, reports, genomic profiles and so on. Once we have acquired the
data the obvious next concerns are addressed by the communication layer and storage layer.
Communication protocols may be defined as per implementation of the IoT infrastructure
built upon 5G or 6G network backbone. The storage layer would deal with the necessary
storage infrastructure. Blockchain techniques may be used for decentralization of information.
The representation layer deals with the computational representation of the acquired data.
The data would generally be acquired from diferent sources with diferent representation
format. A common modelling language is needed for a consistent embedding. For a globally
holistic healthcare framework common schema would be needed to assemble and integrate
multi-modal information in a consistent data structure. The computation layer consists of
the high performance computing infrastructure along with the advanced machine learning
algorithms, image processing and language processing toolkit and models along with rendering
engines. Finally the application layer would provide the necessary interface for visualization,
simulation, and analysis. This can be carried out through standard modes of human computer
interaction or even through augmented and virtual reality platform. Other than this there is a
obvious needs of communication with external repositories such as electronic health records,
government databases, insurance records, demographic information, pharmaceutical and disease
repository, multiomics data banks and more. Additionally there is a need for cyber-security
protocols across the stack and supervision from ethics and regulatory bodies.</p>
      </sec>
      <sec id="sec-3-2">
        <title>3.2. One Species One Schema</title>
        <p>For a digital twin ecosystem we need to operate with data acquired from various sources
such as patients, equipment, healthcare facilities, and external data banks. All these data have
vastly diferent formats and structure. The biggest challenge of this digital twin ecosystem
is to progress towards the one species one schema concept. This refers to a single
&lt;ENTITYATTRIBUTE-RELATION&gt; model that can represent various elements of the healthcare industries
along with their relevant parameters and contexts. This would allow us to create the knowledge
graphs for healthcare digitalization[30]. The need of a common data structure is graphically
summarized in fig. 3.</p>
        <p>This schema for a global knowledge base must be built with some specific properties that
ensures its sustainability. These properties, here abbreviated as M.U.S.C.L.E., refers to the
aspects of
• Multi-modality: Data may come from various sources but must be mapped to the same
schema
• Uniformity: Standardization of data representation is mandatory
• Scalability: The schema should be able to grow with the growing complexities of the
data
• Consistency: The updates in the schema should be non-disruptive in nature
• Longevity: The schema must be able to adapt and grow with time to remain relevant
with the fast moving pace of medical research as it can be a costly afair to revamp the
entire schema
• Ethics: Each transactions in the knowledge based must be traceable to the responsible
healthcare personnel or facility and must be explainable to avoid ethical or legal issues.
3.2.1. Knowledge Base Transactions
The knowledge base that is built upon the schema should be accessed and altered through
serialized transactions. Transactions to update the knowledge base may be at three diferent
1. Content : refers to nuclear updates that deals with specific parameters. These updates
do not disrupt other nodes or edges. e.g. Updating the height and weight of a patient
2. Context : refers to updates that have efect in its immediate neighbourhood. These
updates tends to display contextual significance. Updating diagnosis based on a test
report result. Test report parameters will be updated which will trigger update in the
diagnosis parameters
3. Concept: refers to the updates in the knowledge base that leads to addition, alteration or
deletion of entire conceptual branches. A proposed treatment by a physician opens up a
new branch for the healthcare facility that requires addition of several nodes and edges
such as hospital beds, OT reservations, insurance parameters and so on.</p>
      </sec>
      <sec id="sec-3-3">
        <title>3.3. Unique Biological Identifier (UBID)</title>
        <p>For the realization of a global knowledge repository, the first and most important step is to
develop a unique biological identifier. A unique globally standardized biological identifier must
be created. This may be similar to other identification documents like passports, social security
numbers, taxpayer identification numbers, Aadhar Card, VoterCard etc. However, a biological
identifier must be associated to a biological signature of a being such as the fingerprints, retina
scans or even genome sequence[31]. This must be standardized by the respective government
as per uniform global standards. Most importantly it should be mandatory to associate with
all healthcare related procedures similar to a taxpayer identification being connected with all
ifnancial transactions.</p>
      </sec>
      <sec id="sec-3-4">
        <title>3.4. Globalization</title>
        <p>Besides the UBID being necessary to unify healthcare transactions, a digital twin system would
also require innovation tracking [32] and development of global policies, and standardization.
We must understand that isolated innovation is the source of inconsistencies. Existing predictive
models must be standardized and existing literature must digitized to create a viable ontology.
Additionally an efort must be made to ensure every clinic, hospital, pharmacy, doctor, patients,
equipment is connected to the common Healthcare Framework.</p>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>4. Conclusion</title>
      <p>It is evident that revolution in global healthcare requires a migration to the digital twin ecosystem.
However, several significant actions must be taken. From development of unique biological
identifiers to moving towards a unified knowledge repository built on robust backbone schema.
The proposed work tries to establish the need of "One Species One Schema" and the role that
knowledge representation plays in the transformation of modern healthcare. The schema would
need to be carefully designed to ensure long-term sustainability. The ultimate goal would be
an unified knowledge graph that connects patients, healthcare facilities, professionals and all
other stakeholder to ensure quality of medical services.
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