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<article xmlns:xlink="http://www.w3.org/1999/xlink">
  <front>
    <journal-meta />
    <article-meta>
      <title-group>
        <article-title>Graphing Trees: The Nodes and Edges of Nabokov's Worlds</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Shakeeb Arzoo</string-name>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Aidan Hogan</string-name>
          <xref ref-type="aff" rid="aff2">2</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Stephen H. Blackwell</string-name>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>Department of World Languages and Cultures, University of Tennessee</institution>
          ,
          <addr-line>Knoxville</addr-line>
          ,
          <country country="US">USA</country>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>Development Editor, International Vladimir Nabokov Society</institution>
        </aff>
        <aff id="aff2">
          <label>2</label>
          <institution>IMFD; DCC, University of Chile</institution>
          ,
          <country country="CL">Chile</country>
        </aff>
      </contrib-group>
      <abstract>
        <p>This paper motivates and demonstrates the use of knowledge graphs (KGs) in the literary domain by annotating a specific set of entities, namely trees, in the works of Vladimir Nabokov. We identify and collect 130+ distinct tree species with 2000+ mentions across 20 books and 5300+ print pages in the Nabokovian corpus. These allusive mentions are linked to external databases, putting forward a novel, contextually enriched knowledge base. We also propose a semantic data model, the Tree Annotation Vocabulary (TAV), to capture these annotations alongside their broader literary associations. Lastly, we present a sample evaluation of existing tools to highlight the complexities of entity recognition in a literary context.</p>
      </abstract>
      <kwd-group>
        <kwd>eol&gt;Knowledge Graphs</kwd>
        <kwd>Ontology</kwd>
        <kwd>Semantic Annotation</kwd>
        <kwd>Entity Recognition</kwd>
        <kwd>Entity Linking</kwd>
        <kwd>Literary Criticism</kwd>
        <kwd>Nabokov</kwd>
        <kwd>Trees</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>1. Introduction</title>
      <p>
        Philosopher Richard Eldridge [
        <xref ref-type="bibr" rid="ref1">1</xref>
        ] defined art as something which “presents a subject matter as a focus
for thought and emotional attitude, distinctively fused to the imaginative exploration of material.” To
explore art—an artwork—as an object of "knowledge" is a deceptive, tricky, amorphous, ephemeral
project. This is in part because any artwork—visual, literary, performance—is not a "thing"; rather,
it is a nexus of experiences, of stimuli, and of patterns organised (intentionally and unintentionally)
by a creator, and consciously perceived by an audience. As the once-famous Russian literary critic
Yuli Aikhenvald put it: “Art is not a fact; art is an act” [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ]. An artwork exists in the fluid dynamics
of its reception by an intensely engaged audience; the formal study of artworks ofers not definitive
knowledge, but various snapshots of that evolving reception process, and the materials that provoke it.
      </p>
      <p>Any artwork (including literary works) is a collection of significant units; these units are arranged
by an artist with varying degrees of complexity and intentionality. They exist on several interlinking
planes: lexical, rhetorical, imagistic, figurative, symbolic, rhythmic, self-reflective, intertextual, and
so on. Some artists strive not only to create good stories, but also to create exceedingly complex
systems of "significance", based on subsets of any number of the planes mentioned above. These systems
are designed as patterns, and the patterns on diferent planes may interconnect, or "weave," into a
multiplanar tapestry. In order to experience the richness— the artistic essence—of such systems, patterns,
and tapestries, one must be willing to develop extensive sensitivity to, or "knowledge" of, significant
units in a selection of planes. This constitutes the "intense engagement" on the part of its audience.</p>
      <p>
        Vladimir Nabokov is among the artists most committed to creating these multidimensional networks
within their works. He was explicitly interested in the creation and discovery of patterns, in both
Art and Nature: he also worked as an entomologist for several years. Some of the most important
scholarship on Nabokov’s work has been grounded on discovering and deciphering various of these
interlinked patterns [
        <xref ref-type="bibr" rid="ref3 ref4 ref5 ref6 ref7 ref8 ref9">3, 4, 5, 6, 7, 8, 9</xref>
        ] in order to elucidate otherwise hidden meanings contained by
the texts. The present project builds on Blackwell’s analysis [
        <xref ref-type="bibr" rid="ref10">10</xref>
        ], which identifies and explores several
significant networks built around patterns of trees within Nabokov’s literary art. While that study
presented only a handful of deep excursions into the world of trees within the art-space, the current
project aims to make Nabokov’s world accessible specifically through the lens provided by the totality
of its 2,000+ trees. Though much remains to be discovered, we hope that the tools resulting from this
project will enhance both knowledge and artistic experience surrounding Nabokov’s creations.
      </p>
      <p>
        Nabokov was an intense observer and writer of Nature. This is brought out by his "tree-networks",
i.e., the patterns through which trees occur in his works that connect their natural, tangible, and specific
reality to their symbolic and functional aspects. We find a plethora of references to named and unnamed
trees alongside their ecological habitats, their anatomical aspects (e.g. twigs, tree trunks), functional
aspects (shadows, climbability), and craft uses (furniture, canes, paper, etc.). Due to their density and
their natural camouflage, it is not until we pay close attention to the way these are structured that we
notice the broader thematic concerns, the “web of sense” [
        <xref ref-type="bibr" rid="ref11">11</xref>
        ] underlying the pervasive tree mentions.
      </p>
      <p>
        Knowledge Graphs ofer a way to model domain data with a seamless interconnectivity across
diferent datasets that is flexible enough to accommodate incomplete data. Furthermore, they are
intuitive to understand (both for humans and machines) and expressive enough to represent complex
statements. Finally, the matching of basic graph patterns in the model allows for complex querying,
whereby a faceted view of data can be obtained (with diferent filters) in a tabular format [
        <xref ref-type="bibr" rid="ref12">12</xref>
        ]. For our
purposes, KGs help to capture the finer details of literary knowledge and link them to encyclopaedic
knowledge which would capture its broader context. This conveys the essence of literary annotation
which mostly introduces relevant explanatory information to the main text through the use of inline
notes, footnotes, endnotes, sidenotes, references, among others [
        <xref ref-type="bibr" rid="ref13">13</xref>
        ].
      </p>
      <p>
        In this undertaking, we construct a Tree-KG that explicitly maps out the kind of role(s), meaning(s),
and importance attached to trees in Nabokov’s works. There is substantial evidence to show that he
used them as a crucial design choice in his stories [
        <xref ref-type="bibr" rid="ref14 ref15">14, 15</xref>
        ] and we wish to use them as a critical and
interpretive device that brings out their importance to the conceptualization and design of a Nabokov
story. This KG actualizes the implicit knowledge through which one can focus on a particular tree,
see all its appearances across Nabokov’s work, look at the various meanings it embodies, i.e., the
thematic sense, geographical occurrence (whether endemic or exotic to a particular location), botanical
classification, quantitative aspects, as well as the exact location of the phrases. KGs are not always
wellsuited to complex utterances (for that we have books and articles), but it can connect a myriad diferent
things, from trees in Shakespeare (weeping willow, mulberry), Goethe (ginkgo trees), Chekhov’s Cherry
Orchard (cherry trees), the cypress trees in a painting by Böcklin, or the Bosch painting of The Garden
of Earthly Delights, all that are absorbed and recreated by Nabokov in his own work.
      </p>
      <p>The main contributions of this paper are as follows:
1. Identification and collection of tree-like entities from the Nabokovian corpus, presenting them as
an annotated dataset.
2. An ontological data model adhering to the best practices of Linked Data Principles that captures
the annotated data.
3. An illustrative benchmarking of existing technology that helps in entity recognition.</p>
      <p>The rest of the paper is organized as follows: Section 2 provides background to the work; Section 3
discusses the ontology that captures the literary annotations; Section 4 presents our approach where we
identify and link the tree-like entities in the Nabokov corpus; Section 5 presents some of our experiments
with entity recognition; Section 6 proposes some directions for future work; and Section 7 concludes.</p>
    </sec>
    <sec id="sec-2">
      <title>2. Background</title>
      <p>
        Nabokov’s stories have often been compared to a hypertext-like artifact [
        <xref ref-type="bibr" rid="ref16 ref6">6, 16</xref>
        ] with surprising linkages
and associations joining disparate elements. Such links of meaning have captivated readers and garnered
scholarly attention ever since he gained popularity as a major literary giant of the 20th century. These
covert patterns and the hidden layers of significance have been observed to emerge gradually, as we
begin to pay attention to the verbal texture and the density of allusions behind them.
      </p>
      <p>
        A character in Nabokov’s Pale Fire [
        <xref ref-type="bibr" rid="ref11">11</xref>
        ] observes that “Our poet shared with the English masters the
noble knack of transplanting trees into verse with their sap and shade”. This holds true for Nabokov as
well, as trees in his prose are invoked through sensory details (visual, aural, olfactory, etc.), functional
use (as wooden objects) in human culture, and as objects with a figurative dimension (conceptual
objects). The following passages illustrate those meanings with the relevant entities marked in bold.
      </p>
      <sec id="sec-2-1">
        <title>Scenario 1: Specific Reality to the Setting of a Story</title>
        <p>A pea-tree hedge (the "yellow acacia" of northern Russia), with a midway opening, corresponding to
the court’s screen door, ran parallel to the enclosure and to a path dubbed tropinka Sfinksov ("path of the
Sphingids") because of the hawkmoths visiting at dusk the flufy lilacs along the border that faced the
hedge and likewise broke in the middle.</p>
        <p>
          In the above passage from his autobiography, Nabokov is quite specific about the botanical identity
of the Siberian pea-tree [
          <xref ref-type="bibr" rid="ref18">18</xref>
          ] which evokes the Russia of his boyhood. He advocates following the path
of exactness and fidelity (to the best of a memoirist’s ability) that would evoke a particular locale with
its own set of flora and fauna, conveying a sense of "reality" of a particular time and space to his reader.
No doubt he was aware that many readers would not care whether the tree is a locust tree, or an acacia,
or a pea-tree, just as most readers fail to distinguish between an oak and an elm. However, he hoped
that through curiosity, through repetition, or with the help of scholarly annotation, we would be more
attentive and sensitive to the world surrounding us.
        </p>
      </sec>
      <sec id="sec-2-2">
        <title>Scenario 2: Objects of Human Use</title>
        <p>It was not a hexagonal beauty of Virginia juniper or African cedar, with the maker’s name imprinted
in silver foil, but a very plain, round, technically faceless old pencil of cheap pine, dyed a dingy lilac.</p>
        <p>
          Speak, Memory [
          <xref ref-type="bibr" rid="ref17">17</xref>
          ], Ch. 2, p. 41
        </p>
      </sec>
      <sec id="sec-2-3">
        <title>Transparent Things [19], Ch. 3, p. 6</title>
        <p>
          Trees are often transformed into new objects through a combination of craftmanship and violence
(such objects can also help in creation of art, e.g., violins, penholders), which are so ubiquitous in
human culture that one ceases to think how they are produced. Such objects are often used by
Nabokov at crucial points which would not only advance the plot (e.g., Lips to Lips [
          <xref ref-type="bibr" rid="ref20">20</xref>
          ], where a
"wooden cane" plays a significant role in the plot) but also in a symbolic sense (e.g., in Invitation to
a Beheading [
          <xref ref-type="bibr" rid="ref21">21</xref>
          ], where he describes “a beautifully sharpened pencil [...] as long as the life of any man”).
        </p>
      </sec>
      <sec id="sec-2-4">
        <title>Scenario 3: Figurative Way</title>
        <p>The novel was the famous Quercus, and Cincinnatus had already read a good third of it, or about a
thousand pages. Its protagonist was an oak. The novel was a biography of that oak. . . Employing the
gradual development of the tree (growing lone and mighty at the edge of a canyon at whose bottom the
waters never ceased to din), the author unfolded all the historic events—or shadows of events—of which the
oak could have been a witness. . . It seemed as though the author were sitting with his camera somewhere
among the topmost branches of the Quercus, spying out and catching his prey. Various images of life
would come and go, pausing among the green macules of light. The normal periods of inaction were filled
with scientific descriptions of the oak itself, from the viewpoints of dendrology, ornithology, coleopterology,
mythology—or popular descriptions, with touches of folk humour. Among other things there was a detailed
list of all the initials carved in the bark with their interpretations.</p>
        <p>The above passage is a tour de force of how literature works with its elaborate artifice and the
mechanisms of perspective. Nabokov proposes a meta-novel about an oak tree that serves as a focal
point in time, space, and memory through which a narrative could be anchored. Undoubtedly, Nabokov
carries documentary realism to its absurdist pitch with this example (by imagining the protagonist as
an oak, a passive observer with limited agency) but there is little doubt that its symbolic purpose is to
underline the role of an artist who is at the boundary of everyday, mundane details and the creative,
extra-mundane existence.</p>
        <p>
          These three examples give a hint of the 2000+ mentions comprising more than 130 types of tree in
Nabokov’s corpus. It can be readily seen that a tree in Nabokov, apart from its tree-like qualities1, is
embedded in a wealth of additional details. Far from being excessive, these details form patterns of
significance that engage the general reader as well as the specialist in varying ways. In other words,
by examining the diferent contexts in which the tree-like entities occur, we find a range of meanings
associated with them (including those mentioned in the above examples). These meanings not only link
the botanical notion of trees to their implied geographical distribution, they also encompass certain
literary devices (themes, allusions, etc.) that connect the tree-units across a set/s of works. In efect,
Nabokov intends us to break free of the linear flow of the narrative and adopt a multidimensional
perspective by engaging with the text in a heightened state of attention [
          <xref ref-type="bibr" rid="ref23 ref24">23, 24</xref>
          ].
        </p>
      </sec>
    </sec>
    <sec id="sec-3">
      <title>3. Ontological Representation</title>
      <p>Our aim is to semantically annotate Nabokov’s works by identifying entity mentions and describing
them according to an ontological model. Central to the idea of capturing entity mentions within the
confines of an ontological model lie three aspects. First, the information object (a website, a book, a line
of verse) that serves as the primary "source" of information; second, the fragment within the source
object that contains the exact information ("mentions" containing the "target entities"), and finally, the
targets themselves, that have to be highlighted and linked to an external knowledge base.</p>
      <p>
        The ontology development followed the approach laid down by the W3C recommended Open
Annotation (OA) model [
        <xref ref-type="bibr" rid="ref25">25</xref>
        ], which describes an annotation as “a set of connected resources, typically
including a body and target, and conveys that the body is related to the target.” The exact nature of
this relationship changes according to the intention of the annotation, but the body is most frequently
somehow about the target. Although the OA model is primarily recommended to link web resources (as
reflected by their vocabulary) it can be tweaked to encompass physical documents. This is consistent
with the best practices of ontology development and conceptual modelling [
        <xref ref-type="bibr" rid="ref26">26</xref>
        ].
      </p>
      <p>Let us take an example that demonstrates our modeling. The information object is Nabokov’s first
novel, Mashen’ka (1926), which was translated by the author himself (1970). The electronic editions
used in our graph model are the Vintage International editions (standard reference for scholars of
Nabokov). The selected text reads as:</p>
      <p>And when the whole surface had turned a ridiculous lilac color and Mary’s fingers looked as if she had just
been picking bilberries, Ganin, turning away and staring hard through narrowed eyes at a yellowy-green,
warm, flowing something which at normal times was linden foliage, announced to Mary that he had been
in love with her for a long time.</p>
      <p>
        Mary [
        <xref ref-type="bibr" rid="ref27">27</xref>
        ], Ch. 8, p. 59
      </p>
      <p>The RDF graph annotating the tree mentions in this text per our model is shown in Figure 1; for
these purposes, we define the Tree Annotation Vocabulary (TAV).</p>
      <p>Our model encompasses the detailed bibliographic information that includes the diferent
manifestations of the textual object, Mary. It is based on the Schema.org vocabulary that was extended by</p>
      <sec id="sec-3-1">
        <title>1An engaging discussion in this regard is provided by Colin Tudge [22].</title>
        <p>the W3C community2 to share information about bibliographic objects. The entity mentions form
an instance under the tav:Mention (rdfs:subClassOf oa:SpecificResource) class. This forms the
body of the annotation (tav:LiteraryAnnotation) while the target "LindenTree" forms an instance
under tav:TreeSpecies. The place mentioned in the text is "StPetersburgOblast", an instance
under tav:AdministrativeRegion (owl:equivalentClass of schema:AdministrativeArea), while
the associated literary theme is "FirstLove", both of which serve as targets of the annotation. The
purpose in re-creating equivalents of external terms under our TAV vocabulary was to keep our model
self-contained, i.e., avoid external dependencies (a.k.a. changing versions of external vocabularies).</p>
        <p>
          As mentioned before, the various mentions of "trees" serve several purposes, ranging from
intertextual to intratextual and the extratextual [
          <xref ref-type="bibr" rid="ref28">28</xref>
          ]. These allusive mentions are modelled into our
ontology with the help of classes such as tav:LiteraryTheme, tav:WoodenObject, object
properties like tav:exoticToLocation, tav:naturalizedToLocation with respect to a particular location
(tav:Region rdfs:subClassOf schema:Place) mentioned in the text. Some competency questions
(CQs) posited to help with ontology development are:
1. Where does (X) tree appear in a work by Nabokov?
2. What botanical species is appropriate for the (X) tree appearing in Nabokov?
        </p>
      </sec>
      <sec id="sec-3-2">
        <title>3. What places are associated with (X) tree in a work by Nabokov?</title>
      </sec>
      <sec id="sec-3-3">
        <title>4. What literary themes are associated with (X) tree in a work by Nabokov?</title>
      </sec>
      <sec id="sec-3-4">
        <title>5. What wooden objects are thematically significant in a work by Nabokov?</title>
        <p>2https://www.w3.org/community/schemabibex/
6. What other notable authors or creative works mention (X) tree?</p>
      </sec>
      <sec id="sec-3-5">
        <title>7. What other tree-like entities appear in metonymic relation to (X) tree?</title>
        <p>
          More CQs can be accessed from ontology documentation online (see Appendix A). Finally, the
annotated entities are linked to external knowledge bases, in our case, Wikidata and DBPedia. From
our purview of botanical databases (e.g., WFO Plant List3, Kew Plants of the World Online4, Global
Tree Portal5), Wikidata was found to be the most intuitive to understand, browse, and link. This linking
is expressed through the various sub-properties under skos:mappingRelation [
          <xref ref-type="bibr" rid="ref29">29</xref>
          ]. The associative
relationships ofered by the SKOS vocabulary allow us to link and match entities, even when an exact
match is not available in the target knowledge base. We consistently used skos:broadMatch when
linking a particular tree mention to its genus level and skos:closeMatch when there were diferent
varieties of a particular species (e.g., Quercus robur, or the English Oak has several sub-species and
hybrids depending on the region where they are found). skos:exactMatch was used when there was
substantial evidence to show that a particular species is found in the region mentioned in the text or is
mentioned as such by Nabokov. The next section will provide some examples of the same.
        </p>
        <p>
          At present, the TAV ontology comprises 48 classes, 38 object properties, and 19 data properties.
It was developed on Protégé 5.5.0 [
          <xref ref-type="bibr" rid="ref30">30</xref>
          ]. It can be accessed from https://w3id.org/tav which contains
some sample individuals. When mapped to external vocabularies, TAV comprises 78 classes, 55 object
properties, and 29 data properties. The various versions of TAV can be accessed from Appendix A
mentioned at the end of the paper.
        </p>
        <p>The next section discusses how entities were spotted in the text and linked to knowledge bases.</p>
      </sec>
    </sec>
    <sec id="sec-4">
      <title>4. Entity Recognition and Linking</title>
      <p>
        To spot and identify the diferent species of trees mentioned in the Nabokov corpus, we adopted a
laborious but precise approach. By the Nabokov corpus, we refer to a total of 20 books published in
English (which includes his autobiography, a collection of 68 short stories, novella, etc.) with a count of
over 2.6 million words (2,665,000 words) spanning 5300+ pages in print. We were aware of the diferent
kinds of surface mentions that the tree-like entities [
        <xref ref-type="bibr" rid="ref10">10</xref>
        ] take in the text. Our priority, however, was to
demarcate the boundaries of the entity mentions in the Nabokov corpus, i.e., the exact phrase, section,
page number, and book where they occur, in a structured way (according to TAV vocabulary). To do so,
we gathered a list of the common names of trees (e.g., sallow, willow, baobab, pine, maidenhair, ginkgo,
oak, juniper, Judas tree, etc.) and performed iterative searches (and filtered out false matches) over
the corpus. This approach corresponds to the dictionary or gazetteer approach [
        <xref ref-type="bibr" rid="ref31">31</xref>
        ] in NLP entailing a
semi-automated workflow where the matches are verified manually.
      </p>
      <p>
        It should be noted here that in the botanical sense, "trees" are not stable, classifiable units within
the plant kingdom [
        <xref ref-type="bibr" rid="ref32">32</xref>
        ]. Although the concept of "woodiness" is closely linked with the idea of "true
trees" [
        <xref ref-type="bibr" rid="ref33">33</xref>
        ], monocots (such as the bamboo, palm, banana) are also considered among the arborescent
members [
        <xref ref-type="bibr" rid="ref32">32</xref>
        ]. They are also sub-divided in the Plant kingdom on the basis of height (min. of 2 mts.)
with emphasis laid on a single or multi-stem plant. In the world of Nabokov, these have their own
thematic relevance to the design and unfolding of the plot, hence are worthy of inclusion. In developing
a list of commonly occurring tree species in Europe and America (as the majority of tree species found
in Nabokov are found in these locales), the following three resources were consulted:
• Wikipedia’s Lists of Trees6
• Appendix from Stephen Blackwell’s Nabokov’s Secret Trees [
        <xref ref-type="bibr" rid="ref10">10</xref>
        ]
      </p>
      <sec id="sec-4-1">
        <title>3https://list.worldfloraonline.org</title>
        <p>4https://powo.science.kew.org
5https://www.bgci.org/resources/bgci-databases/globaltree-portal
6https://wikipedia.org/wiki/List_of_trees_and_shrubs_by_taxonomic_family</p>
        <p>
          • Index from Colin Tudge’s The Secret Life of Trees [
          <xref ref-type="bibr" rid="ref22">22</xref>
          ]
        </p>
        <p>
          The entity matching across the Nabokovian corpus was done through a simple Python program with
a reference list at hand. The list mostly contains root words of diferent tree species ("larch", "pine", "oak",
etc.) which encourages the maximum number of matches (see Appendix A). Two expert annotators
refined, verified and validated the data (i.e., the authors of this paper) over the course of several months.
The metadata details as well as the textual integrity were corroborated through Calibre7. The primary
rationale for this brute-force approach is that the tree entities appear with a textual undercurrent,
where meanings are translucent rather than transparent: Nabokov’s strategy aims for overall thematic
coherence through a “network of subtextual, cross-linguistic, and transcultural echoes” [
          <xref ref-type="bibr" rid="ref34">34</xref>
          ]. Let us
illustrate such subtext with some examples.
        </p>
        <p>
          1. Certain trees appear with a multilingual echo, such as the alder tree (Q156904) in Nabokov’s Glory
[
          <xref ref-type="bibr" rid="ref35">35</xref>
          ] through a village-name "Olkhovo" where the protagonist’s mother is said to be born. Similarly,
the place "Eichenberg" [
          <xref ref-type="bibr" rid="ref36">36</xref>
          ] etymologically contains a reference to the oak tree (Q165145) as does
the more explicit "Unter den Linden" [
          <xref ref-type="bibr" rid="ref37">37</xref>
          ] to linden trees (Q163760). Other trees camouflaged
under the context of place-names include but are not limited to "Larchdell Road" [
          <xref ref-type="bibr" rid="ref38">38</xref>
          ] "Pinedale"
[
          <xref ref-type="bibr" rid="ref11 ref39 ref40">39, 11, 40</xref>
          ], "Ponderosa Lodge" [
          <xref ref-type="bibr" rid="ref39">39</xref>
          ], among others.
2. Nabokov has a penchant for using obscure synonyms to suit the rhythmic needs of his prose, to
evoke a secondary meaning as well as delay recognition of a connection, an identity, a pattern
in his verbal texture. Often, these are multilingual puns (Nabokov was trilingual). For example,
the ginkgo tree (Q43284) appears under the surface mentions of "kew tree" [
          <xref ref-type="bibr" rid="ref19">19</xref>
          ], "Chinese tree",
"maidenhair tree", "L’arbre aux quarantes écus d’or" [
          <xref ref-type="bibr" rid="ref40">40</xref>
          ]. Other disguised entity co-references
include "balanic plum" for plum tree [
          <xref ref-type="bibr" rid="ref19">19</xref>
          ], "baguenaudier" (French for bladder senna tree, Q158890)
[
          <xref ref-type="bibr" rid="ref40">40</xref>
          ], "myrrherabol brush" for the myrrh tree (Q164609), [
          <xref ref-type="bibr" rid="ref40">40</xref>
          ], etc.
3. Finally, these entity co-references are frequent, especially when some anatomical aspect acts
as a metonym for the tree entity, such as “he brushed his fingertips against the wet needles”,
where "fir trees" are the main referent in this paragraph [
          <xref ref-type="bibr" rid="ref37">37</xref>
          ]. Other examples include “under the
translucent tree” for "linden tree" [
          <xref ref-type="bibr" rid="ref37">37</xref>
          ], “powerful shower started to drum upon the liriodendron
and imperialis leaves outside” for "tulip tree" and "paulownia tree" respectively [
          <xref ref-type="bibr" rid="ref40">40</xref>
          ], etc.
        </p>
        <p>
          Our second task was entity linking, which comes with its own set of problems. It is not
straightforward to correctly identify the tree species Nabokov had in his mind based on the text. However, as per
his own guidelines, a close reader must make an educated guess as to what a particular word or term
(denoting an entity) “really means in its contextual habitat, within the terms of a certain imagined place
and in the light of a certain literary device” [
          <xref ref-type="bibr" rid="ref18">18</xref>
          ]. To do so, we check the distribution of a particular tree
species with respect to the location mentioned in the text, and express our confidence level with the
SKOS vocabulary [
          <xref ref-type="bibr" rid="ref29">29</xref>
          ]. Some examples are given below:
        </p>
        <p>
          Ember was trying to recall the American name for a similar kind of fir tree in the Rocky Mountains. Two
things happened together: Ember said "Douglas" and a dazzled doe plunged into the blaze of our lights.
Bend Sinister [
          <xref ref-type="bibr" rid="ref41">41</xref>
          ], Ch. 17, p. 226
        </p>
        <p>It is clear that the referent here is the Douglas fir, or more specifically, Pseudotsuga menziesii var.
glauca (Q956705), which is asserted in our knowledge base as skos:exactMatch.</p>
        <p>
          The trees seemed to be a botanist’s delirium: a white rowan with alabaster berries or a birch with red
bark!
The Gift [
          <xref ref-type="bibr" rid="ref37">37</xref>
          ], Ch. 2, p. 121
        </p>
        <p>There are two entities mentioned here, a rowan tree (skos:broadMatch at the genus level would be
Sorbus) and a birch tree (skos:broadMatch would be Betula). Since the setting is in the Tibet/Western
China region, we put forward the tree species (expressed as a skos:closeMatch) as Sorbus oligodonta
(Q1037196) and Betula albosinensis (Q1631520), based on the range and habitat of the species.</p>
        <p>
          . . . thumbed a ride with a Mexican truck, found a suitable gulch in the chaparral and there, after writing
a short note, began placidly eating from her cupped palm the multicolored contents of her handbag. . .
Ada [
          <xref ref-type="bibr" rid="ref40">40</xref>
          ], Pt. 1, Ch. 3, p. 28
        </p>
        <p>
          In this passage, the vegetation-related entities are the “gulch in the chaparral” which seems
unremarkable in itself, except for its euphonic qualities. However, we know from our eforts, that the scrub oak
appears at key places in the novel (Pt. 1, Ch. 42; Pt. 4 Ch. 1) and is thematically significant 8 [
          <xref ref-type="bibr" rid="ref10">10</xref>
          ]. Now,
if we look at the etymology of the word "chaparral", we see it comes from the Spanish word "chaparro",
meaning the “place of the scrub oak”. Hence, the allusion is surely towards the scrub oak (Q1017264)
and should be annotated as such. Such examples hopefully illustrate the challenges regarding entity
linking and how it depends on the background information.
        </p>
        <p>
          Data were initially collected in tabular format for convenience and later converted to RDF through
Protégé’s Cellfie plugin [
          <xref ref-type="bibr" rid="ref42">42</xref>
          ], which involves the writing of some rules, whereby each row in a spreadsheet
is converted into the instances of a class and property values from an ontology. So far, we have integrated
data from three of Nabokov novels ([
          <xref ref-type="bibr" rid="ref27">27</xref>
          ], [
          <xref ref-type="bibr" rid="ref43">43</xref>
          ], [
          <xref ref-type="bibr" rid="ref35">35</xref>
          ]) in our Tree-KG. A visual representation of the
Tree-KG obtained through GraphDB9 is shown in Figure 2.
        </p>
      </sec>
    </sec>
    <sec id="sec-5">
      <title>5. Experiments for Entity Recognition</title>
      <p>
        Entity recognition and linking are fundamental tasks for Information Extraction. Diferent tools have
been developed for these tasks, such as DBPedia Spotlight [
        <xref ref-type="bibr" rid="ref44">44</xref>
        ], OpenTapioca [
        <xref ref-type="bibr" rid="ref45">45</xref>
        ], ANNIE [
        <xref ref-type="bibr" rid="ref46">46</xref>
        ] etc.
With the rapid advent and acceptance of large language models, systems such as ChatGPT10, Gemini11,
      </p>
      <sec id="sec-5-1">
        <title>8https://www.ada.auckland.ac.nz/ada18ann.htm#562429 9https://www.ontotext.com/products/graphdb/download/ 10https://openai.com/chatgpt 11https://gemini.google.com</title>
        <p>Llama12 are also being put to use for information extraction. Since our dataset has been patiently and
carefully annotated by human hands – and given the challenges of entity recognition and linking in
this literary setting – our Tree-KG can serve as a challenging gold dataset to benchmark some of the
existing tools and systems. We describe such a sample evaluation for illustrative purposes.</p>
        <p>In the experiment, we selected DBPedia Spotlight and OpenTapioca as traditional entity linking
systems and three LLM models, GPT-4, Llama 3.1, and Gemini 1.5 Pro, as their alternatives to compare
their capabilities. To evaluate them, we selected 100 passages from the Nabokov corpus that contained
references to "tree entities" and 100 more passages that contained no references. It should be noted that
we focused our tests on entity recognition, because of the challenges mentioned in the previous section.
Table 1 shows the Precision, Recall, and F1 values for the systems mentioned here.</p>
        <p>
          OpenTapioca could not retrieve the relevant results from any of the passages from the novels, because
of its focus on mentions of humans, organizations, and locations in their Wikidata dump [
          <xref ref-type="bibr" rid="ref45">45</xref>
          ]; thus the
system was excluded from the results. We set the confidence of DBPedia Spotlight to 0.2, because we
wished to maximize the recall results for the tree-related entities, as the noise can be easily filtered out
(removing non-tree-related entities via DBpedia). We cannot report the Precision value for DBPedia
Spotlight as it cannot be set to identify only tree-related entities. Even with post-filtering, the recall
value for DBPedia Spotlight was not good enough for our purposes. It can be seen that the LLM models
outperformed the traditional alternatives by a substantial margin, with the best performing model being
Llama 3.1. The dataset comprising the passages and results are available from Zenodo (see Appendix A).
        </p>
      </sec>
    </sec>
    <sec id="sec-6">
      <title>6. Future Work</title>
      <p>Our primary goal in gathering tree-related data is to showcase the remarkable variety of trees found in
Nabokov. We hope to provoke interest not only among the readers, fans, and scholars of Nabokov but also
in the broader community of tree lovers. It is inspired by the vital roles of trees in our ecosystem, which
include their various practical benefits, their physical aesthetics, their diversity, and their ecological
complexity. In other words, although our dataset is fairly large, it remains open to a community-wide
participation and discussion13 which would be essential to generate further annotations, corrections,
links and a general terminological consensus in a Wiki-style knowledge base14.</p>
      <p>
        Some other directions suggested by the present work are:
• An interactive website making the annotated data openly accessible. It would include a SPARQL
endpoint alongside documentation that would be intuitive to use for the general audience. A
sample SPARQL query15 that links the diferent facets of Nabokov’s trees is shown in Figure 3.
• Other tree-related data that were noted but not collected, e.g., trees being food plants of other
organisms, such as birds [
        <xref ref-type="bibr" rid="ref47">47</xref>
        ], lepidoptera [
        <xref ref-type="bibr" rid="ref8">8</xref>
        ], etc., that have their own thematic importance in
Nabokov. A fuller integration that links the diferent mereological and metonymical aspects
of a tree remains to be achieved. References to artworks through trees [
        <xref ref-type="bibr" rid="ref10 ref48">48, 10</xref>
        ] require further
12https://www.meta.ai
13https://thenabokovian.org/
14https://wikiba.se/
15https://www.w3.org/TR/sparql11-query/
      </p>
      <p>SELECT ?Novel ?Chapter ?Page ?Pref ?Exact ?Place ?Theme ?Wiki WHERE {
?Annotation tav:target tav:FirTree , ?Theme , ?Place ; tav:body ?Mention .
?Theme a tav:LiteraryTheme . ?Place a tav:Country .
tav:FirTree skos:closeMatch ?Wiki . ?Phrase tav:occursIn ?Section .
?Mention tav:source ?Novel ; tav:selector ?Phrase .
?Phrase tav:exactText ?Exact .</p>
      <p>OPTIONAL { ?Phrase tav:prefixText ?Pref . }
?Section tav:chapterLabel ?Chapter ; tav:pageNo ?Page .
}
?Novel
tav:KQK_Vintage
tav:KQK_Vintage
. . .</p>
      <p>?Chapter ?Page ?Pref
?Exact</p>
      <p>
        ?Place
Ch. 7
Ch. 7
. . .
expansion. Community engagement can further enrich the Tree-KG by establishing links to
diferent art forms and further integrating with the Linked Open Data (LOD) Cloud.
• A network analysis of trees alongside other networks, i.e., characters [
        <xref ref-type="bibr" rid="ref49">49</xref>
        ], places, motifs, etc.
      </p>
      <p>Such force-directed graphs may require more data, in which case we could plan to collect and
integrate mentions of characters, themes, places, etc., as they occur and interact across the pages
of a Nabokovian text.</p>
    </sec>
    <sec id="sec-7">
      <title>7. Conclusion</title>
      <p>
        Nabokov planted trees in his works with great care and deliberate attention. Certain tree species often
stand out in a particular work, acting as a kind of structuring background for that particular work,
carrying a specific strand of meaning [
        <xref ref-type="bibr" rid="ref10">10</xref>
        ]. With this dedicated knowledge graph, we bring to light
those rich connections that potentially ofer deeper insights into his work. We do so by capturing the
diferent mentions of trees in his corpus, annotating their thematic meaning, noting down their range
and distribution across diferent locales mentioned in the text (e.g., Berlin, St. Petersburg, Crimea, New
York, etc.) as well as their functional aspects (trees transformed into wooden objects). Often, there is
an added layer of complexity, when those trees appear through "frames", as literary or mythological
allusions or as tree metonyms ("olive branch", "laurel tree", "bay leaf", "apple", etc.), but knowledge
graphs are well suited to map those meanings.
      </p>
      <p>We developed an ontology model to describe these annotations building upon existing vocabularies
and standards. Challenges were encountered in defining the tree-like entities (and their metonyms),
spotting them in his corpus, and identifying the best match for the botanical unit at the genus and
species level. We used these annotations to evaluate a number of tools for entity recognition in this
literary setting, including traditional entity linking tools and large language models. Some of the
resources stemming from this efort can be extended and reused in other contexts.</p>
      <p>
        Nabokov famously said “If the mind were constructed on optical lines and if a book could be read in
the same way as a painting is taken in by the eye, that is without the bother of working from left to
right and without the absurdity of beginnings and ends, this would be the ideal way of appreciating a
novel, for thus the author saw it at the moment of its conception” [
        <xref ref-type="bibr" rid="ref23">23</xref>
        ]. We hope to remain true to his
dictum with this Tree-KG.
      </p>
      <p>Acknowledgements Hogan was supported by FONDECYT Grant 1221926 and ANID - Millennium
Science Initiative Program - Code ICN17_002.</p>
    </sec>
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