<?xml version="1.0" encoding="UTF-8"?>
<TEI xml:space="preserve" xmlns="http://www.tei-c.org/ns/1.0" 
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" 
xsi:schemaLocation="http://www.tei-c.org/ns/1.0 https://raw.githubusercontent.com/kermitt2/grobid/master/grobid-home/schemas/xsd/Grobid.xsd"
 xmlns:xlink="http://www.w3.org/1999/xlink">
	<teiHeader xml:lang="en">
		<fileDesc>
			<titleStmt>
				<title level="a" type="main">LARA -embracing almost fully automated experimentation from ground up by using semantic web technologies in Life Sciences</title>
			</titleStmt>
			<publicationStmt>
				<publisher/>
				<availability status="unknown"><licence/></availability>
			</publicationStmt>
			<sourceDesc>
				<biblStruct>
					<analytic>
						<author>
							<persName><forename type="first">Mark</forename><surname>Doerr</surname></persName>
							<email>mark.doerr@uni-greifswald.de</email>
							<affiliation key="aff0">
								<orgName type="institution">University Greifswald</orgName>
								<address>
									<addrLine>Felix-Hausdorff Str.4</addrLine>
									<postCode>17489</postCode>
									<settlement>Greifswald</settlement>
									<country key="DE">Germany</country>
								</address>
							</affiliation>
						</author>
						<author>
							<persName><forename type="first">Stefan</forename><surname>Born</surname></persName>
							<email>stefan.born@posteo.de</email>
							<affiliation key="aff1">
								<orgName type="department">Institute for Biotechnology</orgName>
								<orgName type="institution">Technische Universität Berlin</orgName>
								<address>
									<settlement>Berlin</settlement>
									<country key="DE">Germany</country>
								</address>
							</affiliation>
						</author>
						<title level="a" type="main">LARA -embracing almost fully automated experimentation from ground up by using semantic web technologies in Life Sciences</title>
					</analytic>
					<monogr>
						<idno type="ISSN">1613-0073</idno>
					</monogr>
					<idno type="MD5">FBECF0DCC8C86C10BAC6775BFE44BD9E</idno>
				</biblStruct>
			</sourceDesc>
		</fileDesc>
		<encodingDesc>
			<appInfo>
				<application version="0.7.2" ident="GROBID" when="2025-04-23T17:40+0000">
					<desc>GROBID - A machine learning software for extracting information from scholarly documents</desc>
					<ref target="https://github.com/kermitt2/grobid"/>
				</application>
			</appInfo>
		</encodingDesc>
		<profileDesc>
			<textClass>
				<keywords>
					<term>semantic web</term>
					<term>life science</term>
					<term>labautomation</term>
					<term>robotics</term>
					<term>machine learning</term>
				</keywords>
			</textClass>
			<abstract>
<div xmlns="http://www.tei-c.org/ns/1.0"><p>LARA (https://gitlab.com/larasuite) is an open source lab automation and research data management system of the next generation:</p><p>It utilises radical automation of most aspects of lab experimentation by applying standardised lab communication protocols, e.g. SiLA <ref type="bibr" target="#b0">[1]</ref>, between machines and human scientists, a new, Turing complete process-and procedure description language pythonLab <ref type="bibr" target="#b1">[2]</ref>, an open lab orchestrator [3] for running procedures and processes in the lab, open, JSON-LD based, linked data-and metadata formats, called SciDat [4], ontology based data representation and data synchronisation between different LARA instances and other repositories, like Dataverse and Zenodo (https://zenodo.org). Data / metadata can be queried through the LARA SPARQL endpoint. LARA strives for collecting and combining all data that is relevant to most common Life-Science experiments, like experiment planning, processes and procedures running the experiments (with their documented outcome), parts-and devices used in the experiments, substances, organisms, samples, etc.</p><p>It is designed to reduce data inputs of scientist to the bare minimum and make data accessible and findable through deep query infrastructures.</p><p>This also enables advanced Machine Learning and AI applications to access data in a machine-understandable, "semantic" form.</p><p>To illustrate this interoperability between the LARA database and Machine Learning algorithms, a demonstration with a newly developed Machine Learning Framework that uses semantic technologies is planned.</p></div>
			</abstract>
		</profileDesc>
	</teiHeader>
	<text xml:lang="en">
		<body/>
		<back>

			<div type="acknowledgement">
<div xmlns="http://www.tei-c.org/ns/1.0"><head>Acknowledgments</head><p>The authors thank the German Research Foundation / Deutsche Forschungsgemeinschaft DFG, (grant:NFDI4DCat) and the German Federal Ministry of Education and Research, Semantic Web Applications and Tools for Health Care and Life Science conference (SWAT4HCLS 2024), February 26-29, 2024, Leiden, The Netherlands</p></div>
			</div>

			<div type="references">

				<listBibl>

<biblStruct xml:id="b0">
	<monogr>
		<ptr target="https://sila-standard.org" />
		<title level="m">SiLA -standardisation in lab-automation</title>
				<imprint>
			<date type="published" when="2023">2023</date>
		</imprint>
	</monogr>
	<note>sila standard</note>
</biblStruct>

<biblStruct xml:id="b1">
	<monogr>
		<author>
			<persName><forename type="first">M</forename><surname>Doerr</surname></persName>
		</author>
		<author>
			<persName><forename type="first">S</forename><surname>Maak</surname></persName>
		</author>
		<ptr target="https://gitlab.com/opensourcelab/pythonlab" />
		<title level="m">pythonLab -labprocess-and procedure description language</title>
				<imprint>
			<date type="published" when="2023">2023</date>
		</imprint>
	</monogr>
</biblStruct>

<biblStruct xml:id="b2">
	<monogr>
		<author>
			<persName><forename type="first">S</forename><surname>Maak</surname></persName>
		</author>
		<author>
			<persName><forename type="first">M</forename><surname>Doerr</surname></persName>
		</author>
		<ptr target="https://gitlab.com/opensourcelab/laborchestrator" />
		<title level="m">Lab -orchestrator</title>
				<imprint>
			<date type="published" when="2023">2023</date>
		</imprint>
	</monogr>
</biblStruct>

<biblStruct xml:id="b3">
	<monogr>
		<author>
			<persName><forename type="first">M</forename><surname>Doerr</surname></persName>
		</author>
		<ptr target="https://gitlab.com/opensourcelab/scientificdata/scidat" />
		<title level="m">SciDat -scientfic data and metadata standard</title>
				<imprint>
			<date type="published" when="2023">2023</date>
		</imprint>
	</monogr>
</biblStruct>

				</listBibl>
			</div>
		</back>
	</text>
</TEI>
