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  <front>
    <journal-meta>
      <issn pub-type="ppub">1613-0073</issn>
    </journal-meta>
    <article-meta>
      <title-group>
        <article-title>the Bioeconomy</article-title>
      </title-group>
      <contrib-group>
        <contrib contrib-type="author">
          <string-name>Kim Schmidt</string-name>
          <email>kim.schmidt@dbfz.de</email>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Kai Sven Radtke</string-name>
          <email>kai.sven.radtke@dbfz.de</email>
          <xref ref-type="aff" rid="aff0">0</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Marco Selig</string-name>
          <email>marco.selig@dbfz.de</email>
          <xref ref-type="aff" rid="aff0">0</xref>
          <xref ref-type="aff" rid="aff1">1</xref>
        </contrib>
        <contrib contrib-type="author">
          <string-name>Workshop</string-name>
        </contrib>
        <aff id="aff0">
          <label>0</label>
          <institution>DBFZ - Deutsches Biomasseforschungszentrum gGmbh</institution>
          ,
          <addr-line>Torgauer Straße 116, 04347 Leipzig</addr-line>
          ,
          <country country="DE">Germany</country>
        </aff>
        <aff id="aff1">
          <label>1</label>
          <institution>KIDA, AI consultancy</institution>
        </aff>
      </contrib-group>
      <pub-date>
        <year>2024</year>
      </pub-date>
      <fpage>26</fpage>
      <lpage>28</lpage>
      <abstract>
        <p>Due to climate change and the Earth overshoot day, that is becoming earlier every year, it is getting more important to use renewable resources and, in particular, biogenic waste and residues instead of fossil resources. There is currently no general scheme to characterise diferent biogenic wastes and residues and their according legal regulations. We intend to create an ontology that contains all information necessary to (i) clearly identify biomasses and (ii) to enable dealing with it in a bioeconomic and industrial context, which is why the ontology shall be shared with researchers, industry and policy makers. Since this is an early stage work, we want to start with 77 residues from the DBFZ Resource Database developed at the DBFZ Leipzig, Germany.</p>
      </abstract>
      <kwd-group>
        <kwd>bioeconomy</kwd>
        <kwd>residues</kwd>
        <kwd>biomass</kwd>
        <kwd>ontology</kwd>
        <kwd>biogenic resources</kwd>
        <kwd>bio-based products</kwd>
        <kwd>ecological sustainability</kwd>
      </kwd-group>
    </article-meta>
  </front>
  <body>
    <sec id="sec-1">
      <title>1. Introduction</title>
      <p>
        according to the Federal Ministry of Food and Agriculture [
        <xref ref-type="bibr" rid="ref1">1</xref>
        ].
      </p>
      <p>
        And the afords for sustainable practices are necessary since, according to Lin and Wackernagel [
        <xref ref-type="bibr" rid="ref2">2</xref>
        ],
the earth overshoot day was on August 1st for 2024 and is continuously becoming earlier each year.
For Germany it is even worse, the overshoot day was May 2nd 2024 [
        <xref ref-type="bibr" rid="ref3">3</xref>
        ], which is position 35 of 126
countries. The key message of these calculations is, that humanity uses much more resources than the
earth can reproduce during one year.
      </p>
      <p>
        The production of all goods we need and use (primary production, e.g. food, technical devices,
energy) and our every day life (e.g. eating, showering) are resulting in a huge amount of waste [
        <xref ref-type="bibr" rid="ref4 ref5">4, 5</xref>
        ].
However, after certain processing steps, some of these wastes, residues or by-products can be used for
other beneficial things. If we use residues wisely instead of just burning or depositing them, some of
the primary resources can be replaced and thus their production can be reduced.
      </p>
      <p>
        To reuse residues, many things have to be considered. Some residues as reclaimed wood or green
cutting from the roadside can have a high concentration of heavy metals and thus their recycling is
limited. The European Union (EU) passed many guidelines, regulations and laws about how to treat
residues [
        <xref ref-type="bibr" rid="ref6 ref7">6, 7</xref>
        ]. In addition, every country that is part of the EU has its guidelines, regulations and laws
about this topic. Hence, it is very challenging to know all of them.
      </p>
      <p>A farmer might wonder, who could be interested in the leafs of their sugar beets or in the liquid
manure of their cattle. With more knowledge about the characteristics of their residues and related
regulations and laws, producers could make advantageous ofers. On the other hand, there might be a</p>
      <p>CEUR</p>
      <p>ceur-ws.org
start-up team that is looking for residues to produce more sustainable soles for their new hiking shoes
without any clue what could be suitable. Due to the huge amount of diferent regulations and residues,
it is hard for all concerned to get an overview, which residues would be suitable for certain production,
how much amount is available, and what is the legal framework. Additionally, there is not yet a central
contact point to get this information.</p>
      <p>
        Being aware of so many issues and questions regarding the availability and use of residues, we want
to create an ontology that can help diferent stakeholders to answer their questions. This ontology
shall include some of the most applicable guidelines, regulations and laws from EU and Germany for
the classification of residues [
        <xref ref-type="bibr" rid="ref8">8</xref>
        ]. The diferent classes of residues will have characteristics that can
indicate possibilities for further usage (e.g. amount of available oil or glucose, amount of heavy metals)
or funding, and even show current usages.
      </p>
      <p>
        Until now, this is an early stage work and we are building up a first ontology including only residues
from the bioeconomy in Germany. This ontology will include the information from our DBFZ Resource
Database (https://datalab.dbfz.de/resdb), which was developed by Naegeli de Torres et al. [
        <xref ref-type="bibr" rid="ref9">9</xref>
        ] and
contains the yearly amount and some characteristics of 77 biogenic residues. More residues maybe also
outside the bioeconomy will follow later. A first inspiration for the ontology was given in Dotzauer
et al. [10].
      </p>
    </sec>
    <sec id="sec-2">
      <title>2. Methods and Material</title>
      <p>In this section we describe briefly what an ontology is and how we will create our ontology for classifying
residues from the bioeconomy. Additionally, we introduce the Resource Database as the base for the
ifrst stage of our ontology.</p>
      <sec id="sec-2-1">
        <title>2.1. Ontology</title>
        <p>An ontology in the sense of computer science is a formal way to represent knowledge. Domain-specific
terms and concepts (called classes) are connected to each other (connections are called relations) and
thus portray a part of the real world. An ontology should be machine readable and understandable.
This makes them usable for web applications and online search, but also for Artificial Intelligence (AI).</p>
        <p>Creating such an ontology is an iterative process and there is never only one correct ontology about
on topic [11]. According to Noy and McGuinness [11], the following steps should be considered before
starting programming and can be used as a red thread during the genesis of the ontology. However,
they can and will be adapted over time.</p>
        <p>1. Localize the domain of the ontology and its aim: What is it about and who will use it? What
questions shall be answered with the ontology?
2. Reuse existing ontologies: Is there anything suitable already prepared?
3. List necessary terms for classes and relations.
4. Define useful classes and order them in a hierarchy.
5. Define properties of the classes.
6. Define restrictions of the properties (boundaries).
7. Create instances (real world individuals).</p>
        <p>Following this recommendation, according to step 1, we defined the bioeconomy as domain of our
ontology1 and everybody ofering or requiring residues as target group. The aim is to designate all
residues that are available in Germany. The questions, that the ontology shall answer (also called
competency questions) are e.g.: How many residues result from the cultivation of leguminous plants?
What kind of faeces result from diferent farming methods of cattle? Can I make bio-plastics from apple
pomace? What residue is available for the sole of recyclable hiking shoes?
1As already mentioned above, the ontology shall increase over time. We start with a first and small version focusing on the
residues from the DBFZ Resource Database. This is what we mean by “our ontology” in the following.</p>
        <p>
          Following step 2, we found an interesting ontology about bioeconomy called BiOnto [12], which
has a broad range of information. Unfortunately it does not ofer enough details for our use case,
though it is very comprehensive. The BiOnto ontology was not made for a classification of residues,
but for an overview of important terms and stakeholders in the topic of the bioeconomy. Maybe
some parts of it can be useful in a later stage of our ontology. Instead of using existing ontologies,
we focused on regulations as a base, since this is very important for following processing steps of
residues. In addition, some questions regarding a taxonomy for residues are already answered with
these regulations. The most important regulations are the Waste Catalogue Regulation Federal Ministry
for the Environment, Nature Conservation and Nuclear Safety [
          <xref ref-type="bibr" rid="ref8">8</xref>
          ] (national implementation of the
European Waste Catalogue), the renewable energy directive (RED) II [13], RED III [
          <xref ref-type="bibr" rid="ref7">7</xref>
          ], and the DIN EN
ISO 17225-1:2021-10 (Solid biofuels) [14].
        </p>
        <p>Some of the necessary terms are e.g. agriculture, forestry, industry, plant-based, animal-based,
manure, slurry, leafs, roots, sugar beet, dairy cow, porker, apple pomace, tobacco, reclaimed wood,
sludge, biomass, heating value, silicon concentration, etc. The usage of these terms for steps 4 to 6 is
still work in progress.</p>
        <p>To create the ontology, we use Protégé [15], which is an open source ontology editor from Stanford
University. A first glance of the hierarchy is given in Fig. 1. The general design of the ontology can be
described as a combination of several taxonomies taken from regulations and guidelines from the EU
and Germany, in which a lot of characteristics of residue groups and individuals are included.</p>
      </sec>
      <sec id="sec-2-2">
        <title>2.2. DBFZ Resource Database</title>
        <p>
          The DBFZ Resource Database considers diferent types of national biomass potentials (e.g., theoretical
or technical biomass potential) for Germany. It currently contains information on 77 biogenic wastes
and residues [
          <xref ref-type="bibr" rid="ref9">9</xref>
          ] for several years. The potentials, possible utilizations and the significance in target
markets (e.g. transport sector) can be explored via an interactive web application (see https://datalab.
dbfz.de/resdb/potentials). For more information see also Brosowski [16] and Krause et al. [17, 18].
        </p>
      </sec>
    </sec>
    <sec id="sec-3">
      <title>3. Conclusions and Outlook</title>
      <p>We want to create a simple way to share information about residues and answer questions about their
usage and characteristics. For a high generalization of all this information, we will comply with several
national and European regulations and work together with experts from the bioeconomy. Thus we will
develop a tool that can be used by farmers, industry but also researchers and policy makers.</p>
      <p>As soon as the ontology has reached a stage where enough information is included, we will activate
our contacts to diferent players in the bioeconomy to evaluate our afords and to get more insights,
which characteristics are additionally desired. With this already existing network we will bring our
work in use later.</p>
      <p>In the beginning we will focus on DBFZ Resource Database and its biomasses that are of interest in
the bioeconomy. However, we plan to increase the ontology to all residues and renewable resources
available in Germany and maybe even Europe. For a more comfortable usage of this ontology we plan
to connect it with a Large Language Model (LLM) that answers questions from users directly on the
base of the ontology.</p>
      <p>LLMs and AI are planned to help maintaining the validity of the ontology. Since regulations keep on
changing over the years, this will be an important issue. However, in this stage of the work, in is not
the main focus of our activities.</p>
      <p>Since this is an early stage work and the ontology is not yet finished, and thus neither well evaluated
nor published. However, it is planned to publish the ontology following the FAIR principles.</p>
    </sec>
    <sec id="sec-4">
      <title>Acknowledgments References</title>
      <p>AI experts from KIDA were involved in the preparation of this paper. KIDA is supported by funds of the
Federal Ministry of Food and Agriculture (BMEL) based on a decision of the Parliament of the Federal
Republic of Germany via the Federal Ofice for Agriculture and Food (BLE).
[10] M. Dotzauer, K. S. Radtke, M. Jordan, D. Thrän, Advanced SQL-Database for bioenergy technologies
- A catalogue for bio-resources, conversion technologies, energy carriers, and supply applications,
Heliyon 10 (2024) e25434. doi:https://doi.org/10.1016/j.heliyon.2024.e25434.
[11] N. F. Noy, D. L. McGuinness, Ontology Development 101: A Guide to Creating Your First Ontology,
Technical Report, Stanford Knowledge Systems Laboratory, 2001. URL: http://www.ksl.stanford.
edu/people/dlm/papers/ontology-tutorial-noy-mcguinness-abstract.html.
[12] N. Biancone, C. Bicchielli, P. Grifoni, F. Ferri, BiOnto Ontology, 2021. doi:10.5281/zenodo.</p>
      <p>5589773.
[13] European Parliament, Council of the European Union, Directive (EU) 2018/2001 of the European
Parliament and of the Council of 11 December 2018 on the promotion of the use of energy from
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[14] Technischen Komitee ISO/TC 238, Technischen Komitee CEN/TC 335, DIN EN ISO 17225-1:2021-10
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Anforderungen), 2021.
[15] M. A. Musen, The protégé project: a look back and a look forward, AI Matters 1 (2015) 4–12.</p>
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[16] A. Brosowski, National Resource Monitoring for Biogenic Residues, By-products and Wastes:
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