=Paper= {{Paper |id=Vol-410/paper-10 |storemode=property |title=Essential SNOMED: Simplifying SNOMED-CT and supporting Integration with Health Information Models |pdfUrl=https://ceur-ws.org/Vol-410/Paper10.pdf |volume=Vol-410 |dblpUrl=https://dblp.org/rec/conf/krmed/MacIsaacWRGEP08 }} ==Essential SNOMED: Simplifying SNOMED-CT and supporting Integration with Health Information Models== https://ceur-ws.org/Vol-410/Paper10.pdf
Representing and sharing knowledge using SNOMED
Proceedings of the 3rd international conference on Knowledge Representation in Medicine (KR-MED 2008)
R. Cornet, K.A. Spackman (Eds)




                Essential SNOMED: Simplifying SNOMED CT and Supporting Integration
                                  with Health Information Models

               Peter MacIsaac, MB.BS, FRACGP, MPH1, Don Walker, MB.BS 2 , Rachel Richesson PhD,
                         MPH3, Heather Grain FACHI4,Peter Elkin, MD5, Jon Patrick PhD6

                      1
                      Terminology Central, Canberra, Australia, peter@macisaacinformatics.org;
                  2
                  University of Adelaide, Adelaide, South Australia, donald.walker@adelaide.edu.au;
               3
                University of South Florida College of Medicine, Tampa, FL, USA, richesrl@epi.usf.edu;
                    4
                     LaTrobe University, Melbourne, Victoria, Australia, h.grain@latrobe.edu.au;
                               5
                                Mayo Clinic, Rochester, MN, USA, elkin.peter@mayo.edu
                            6
                              University of Sydney, NSW, Australia, jonpat@cs.usyd.edu.au
                                 ABSTRACT
              SNOMED CT (SCT) has been designed and                                       INTRODUCTION
              implemented in an era when health computer                SNOMED CT (SCT) is becoming the international
              systems generally required terminology                    standard clinical terminology with a new
              representations in the form of singular pre-              international licensing and governance process
              coordinated concepts. Consequently, much of SCT           which makes it widely accessible. The adoption of
              content represents pre-coordinated concepts and           SCT by multiple countries was influenced by many
              their relationships. In this conceptual paper the         published studies demonstrating its comprehensive
              role of pre- and post-coordinated terminology             coverage [1-4] and advanced structural features.
              expressions are considered in the context of the          SNOMED CT has antecedents in the College of
              current development direction of Electronic Health        American Pathologists family of terminologies, the
              Records and the use of communications                     UK National Health Service Read Codes. As with
              and knowledge repositories. The move from                 any living language, it has absorbed content from a
              current SCT structures to an implementation               number of other terminologies and classifications.
              form of SCT that focuses on “atomic concepts”             SCT contains concepts and terms that describe the
              will support post-coordination and terminology            “language of use” as well as concepts which define
              binding to information models. This core or               the “language of meaning”[5-7]. Consequently, SCT
              “essential” SNOMED CT - called SNOMED                     contains many pre-coordinated concepts that have
              Essential Terminology (S-ET) - would be                   varying levels of semantic complexity alongside the
              smaller in terms of core concept numbers,                 component or essential concepts which are
              simpler, easier to maintain and more intuitive            themselves the building blocks of these complex
              for        implementers.       Our       proposed         clinical expressions. While there are sound
              implementation form of SNOMED CT would                    historical and ongoing pragmatic reasons for this
              contain only “atomic concepts” with their                 evolutionary development, the resulting mix of
              attendant hierarchies and relationship data. These        concept structures makes implementation within
              would be supported by a strict model for                  various information models complex and prone to
              representing current and future pre-coordinated           variation. Currently, SCT is “cluttered” with pre-
              concepts based on the use of an existing                  coordinated terms that are incompletely defined by the
              specific post- coordination expression,                   internal information model that exists within SCT,
              grammar, or representation. The resulting                 making transformations between existing pre-
              concept       expressions    would     be    post-        coordinated     terms    and    post-     coordinated
              coordinated from a smaller core of atomic                 representations difficult to achieve. This result
              components. Using definitional relationships, the         limits opportunities for interoperability across
              proposed implementation form could equate                 systems, [8] which is one of the key objectives of a
              existing pre-coordinated terms with post-                 controlled terminology.
              coordinated representations, allowing SCT to
              maintain links with legacy data. A strategy for           This conceptual paper brings to notice issues that
              testing and implementing this approach is
              discussed and empirical research and feasibility
              testing is recommended.




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R. Cornet, K.A. Spackman (Eds)



              are well known within the health informatics                   coordinated concepts, and an implementation
              community and proposes what may, at first glance,              perspective. Simple examples have been selected,
              seem to be radical surgery. This proposal is in                not to prove the feasibility of this approach, but to
              reality an extension and combination of existing               illustrate the principles. The need for a more
              features of SCT to create a more tractable solution            technically challenging and quantitative approach
              to support both SCT development and the art and                to evaluation of this proposal is recognized and
              science of terminology development. This paper is              discussed.
              not a report of a quantitative analysis of SCT
              structures or experimental results of the types of                TERMINOLOGIES AND INFORMATION
              change proposed. These should come later, if the                                   MODELS
              fundamental proposition is believed to be sound                It is now widely accepted that health information
              and a potential contribution to terminology                    storage is achieved through a combination of the
              development and maintenance methods.                           use of controlled terminologies and standardized
                                                                             data models or architecture, yet the boundaries
               The computational representation of data is a                 between the models used for terminology
               combination of the use of information models                  construction and health record construction are
               and terminology. We propose a variation,                      blurred. [9-12] The HL7 TermInfo project
               restructure and extension o f t h e c u r r e n t             attempted to resolve this by providing guidance
               SNOMED-CT terminology to support                              on how SNOMED CT could be used in HL7
               implementation in various information models.                 version 3 messages and data structures. [12-14]

               Using a pragmatic approach the SCT would be                   An example of this terminology model -
               altered in that existing pre-coordinated                      information model interface is the question of
               concepts would be identified, flagged and then                whether concept negation should be managed
               defined through linkage to their atomic                       within the terminology or within the data model.
               concepts and relationship types. The atomic or                Should the negation be expressed as part of the
               essential concepts would continue to be                       terminological unit: “no history of breast cancer”,
               placed in logical and definitional hierarchies                or as different components within an information
               and relationship structures and subject to the                model: “history of breast cancer” + “negative”?.
               use of description logic for definition,                      [15] The semantics can be represented in the
               inference,      and       classification    purposes.         terminology as a pre or post coordinated concept or
               Existing pre-coordinated SCT concepts would                   in a combination of the data model and
               retain their identifiers and be linked to the modified        terminology. The machinery to support this latter
               terminology as “pre-defined-post-coordinated                  approach is contained in standard information
               concepts”, and would be logically equivalent to any           models such as the HL7 Reference Information
               post-coordination representing the same meaning.              Model (RIM).[12] HL7’s TermInfo working group
               The retention of pre-coordinated concepts and the             has recommended that when SNOMED is being
               specification of their computational definitions              used in HL7 V3 models, negation be managed in
               would allow pre-coordinated terms to be used in               the terminology and that the model based approach
               interface applications, as pre-coordinated terms              to attaching a negation indicator be deprecated.
               can be useful in helping data entry to be                     This issue points to the need for sufficient
               more consistent: supporting the language of                   flexibility in the management of post-coordination
               use. If users have a retrieval list of pre-                   to allow for the transformation of concept
               coordinated concepts that have post-coordinated               structures and modifiers between the various
               equivalents, application developers can encourage             options. The existence of other data and
               users to use a more consistent post-coordinated               information models (e.g., CDISC) – which might
               form or to use entry terms that have relationships            develop and endorse their own guidance for use
               to post-coordinated expressions using fully-                  of complex terminologies such as SCT -
               defined atomic concepts.                                      suggest that standardization of SCT terminology
                                                                             use in HL7 (RIM-based) applications might not
               This approach to the re-organization of SCT with              guarantee interoperability with applications
               the formal expression of the canonical form for               using other information models. [16]
               pre-coordination is described as “ S N O M E D
               Essential      Terminology”        (S-ET),   or               While the issue of terminology and information
               simply “Essential SNOMED”; the name                           model interaction is somewhat independent of the
               coined by Dr. Walker when first describing                    way that coordination of complex concepts occurs,
               this approach. This paper describes the case                  there is a need for both pre and post-coordinated
               for change in SCT representation and advantages               approaches to co-exist to fully support the spectrum
               of moving to this representation, the                         of information representation. It is also recognized
               background to the development of this                         that equivalence between pre-coordinated and post-
               approach, a representation model for pre-                     coordinated concepts has to be established to




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Proceedings of the 3rd international conference on Knowledge Representation in Medicine (KR-MED 2008)
R. Cornet, K.A. Spackman (Eds)



               maintain consistency in interpretation of                   types were accommodated. The Essential
               terminology and between concept representation              SNOMED notion, which was initially
               using different combinations of terminology and             canvassed informally        within the health
               information model binding. In the current SCT               terminology community in 2001, was further
               infrastructure this is achieved using computation           developed following a comparative technical
               and testing the equivalence of the canonical form of        analysis of several terminology options that were
               the two terminological variations. This requires            then being investigated for use in Australian
               that all of the atomic or component concepts                General Practice [23] and which subsequently
               and pre- coordinated concepts are fully defined             recommended use of SCT leading in time to
               - not the case in practice. Having a formal                 Australia becoming an early adopter of a national
               definition explicitly developed for current and             SCT license. A review of candidate
               future pre- coordinated concepts within                     terminologies at that time for use in General
               SNOMED would support the recognition of                     Practice examined several options. One terminology,
               equivalence. [8, 17, 18]                                    DOCLE, was constructed of atomic concepts,
                                                                           joined by operators using a Bachus Naur Form
                         ISSUES WITH SNOMED-CT                             (BNF), a standard system for representation of
                             IMPLEMENTATION                                computable expressions using syntax or rules.
               Several studies have shown that inter-rater                 [24] What was notable was the extensive use of
               reliability of SCT coding is poor, at least in part         pre-coordinated terms that were constructed from
               due to the complexity of the SCT structure and the          atomic elements. For example “cancer@breast”
               inconsistency of existing content. [3, 19-21] This          was a pre-coordinated concept for “breast cancer”,
               paper proposes that a simpler, more consistent              yet it is constructed using a post-coordination
               representation of SCT will reduce confusion and             model of atomic concepts and the location operator
               improve the quality of SCT implementation.                  .“@”. The process of normalization of DOCLE
               This would need to be tested once working                   for inclusion in a terminology service found that
               subsets of the S-ET have been developed and so              a number of atomic concepts needed to be
               examine the impact on coding consistency of the             created to support existing content. Considering
               interaction between the information model and               this approach and drawing on prior experience
               the use of differently coordinated terminology.             with the development of a medicines
               SCT size will certainly grow as new countries               terminology requiring a full set of atomic
               adopt it, especially when it becomes the                    elements which were combined to create fully
               terminology to support the many uses of coded               defined pre-coordinated medicines concepts,
               clinical data, such as public heath. Trying to              it was postulated that the SCT terminology
               keep up with the need for language of use                   could be significantly simplified by creating a
               through definition of pre-coordinated concept               separate data structure for the pre-coordinated
               phrases is a recipe for “combinatorial explosion”           concepts where these were parsed and then
               in the size of a terminology. This is bad enough            described in a post- coordination grammar. [25]
               in a terminology of simple structure, yet in one
               of SCTs complexity and richness of function,                       DESIGN OF ESSENTIAL SNOMED
               the impact is especially significant. A key                 Essential SNOMED would contain a complete set
               technical challenge involves keeping the                    of “atomic concepts” from which all other concepts
               terminology to a manageable size and level of               could be constructed by post-coordination. These
               complexity so that it is both maintainable and              atomic concepts would be carefully crafted into
               supports end users’ applications. A second                  their hierarchies and defined by their relationships.
               challenge for SCT maintenance is to allow                   SNOMED CT most likely contains many - if
               compatibility with historical versions used by              not most - of these atomic concepts. They
               legacy applications while maintaining                       would consist of both primitive and fully
               relevance as the core terminology resource                  defined concepts. The large number of pre-
               for the current and future generations of health            coordinated concepts that are not in the above
               information systems. The model proposed in                  group should be “flagged” in the complete
               this paper will support both of these                       SNOMED CT data structure as “predefined-post-
               objectives.                                                 coordinated equivalent concepts”, and eventually
                                                                           associated with their post-coordinated defining
                BACKGROUND TO S-ET DEVELOPMENT                             atomic concepts using a formal post
               In 1999 a combined pre and post-coordinated                 coordination or compositional syntax as is
               model for a medicines terminology was proposed              already described. This group of pre-
               by two of the authors (DW and PM) for                       coordinated concepts would not rely on their
               Australia, based on an architecture designed                hierarchical position or SNOMED relationships for
               earlier by DW for a proprietary drug information            their definition - instead they would be defined by
               service. Both pre-coordinated concepts and their            the compositional expression (or formalism) used
               contained atomic components and relationship                to construct their atomic post-coordinated concepts




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               (combination of existing atomic concepts), as                   The advantages of this proposed structure for SCT
               described above. All the existing pre-                          are reduced size and complexity for ease of
               coordinated concepts in SCT could remain, along                 implementation and maintenance. An inevitable
               with their identifier for use where the situation               outcome would be a reduction in the
               required this approach. Pre-coordinated concepts                combinatorial explosion that occurs when rampant
               being added to SCT would also follow this pattern.              pre-coordination of concepts and phrases occurs,
                                                                               yet this comes at the cost of introducing a new
               For example, the pre-coordinated concept                        element in the post coordination expression that
               “Cellulitis of the left foot with osteomyelitis of the          links the pre-coordinated concepts to their atomic
               third metatarsal without lymphangitis” can be                   elements. The core terminology concepts and
               expressed using atomic concepts and relationship                hierarchies should be however much simplified..
               types, is shown in Table 1. The concepts and                    The core of S-ET would grow some as new
               relationship concepts that comprise the definition              atomic concepts were added. The S-ET structure
               would all be considered core Essential SNOMED                   would be expressively intuitive as its approach to
               content.                                                        concept r e p r e s e n t a t i o n w o u l d s u p p o r t
               Oper-        Disorder        Has-           Has-                concept          constructions.              Hierarchical
               ator                         FindingSite    Laterality          simplification would result as the definition of
                            Cellulitis      Foot           Left                the many pre-coordinated-concepts would be
                                                                               independent of immediate hierarchies or
                and         Osteomyelitis   third
                                            metatarsal
                                                                               relationships – S-ET would use the compositional
                                                                               expression to link with hierarchies and defining
                Without     Lymphangitis
                                                                               relationships of the atomic concepts. Existing
                                                                               approaches to canonical forms would continue and
               Table 1 – Definitional relationships of an existing pre-        allow equivalence testing between different pre-
               coordinated SCT concept.                                        coordinated concepts and post-coordinated
               The current SNOMED CT terminology model                         expressions. Pre-coordinated concepts would still
               specifies relationships between concepts and terms,             be able to be represented in a hierarchical
               but does not make a distinction between post-                   arrangement to support inference and subsumption,
               coordinated concepts expressions and pre-                       however these could be calculated rather than
               coordinated concepts. We propose that this                      explicit expressed as happens currently in SCT. In
               distinction be made explicitly, as a tool to assist in          this model the hierarchical relationships would be
               SNOMED-CT terminology maintenance and                           inferred rather than the canonical form.
               implementation. Figure 1 describes the way
               that the new architectural elements could be linked             Equating pre- and post-coordination may be easier,
               with existing S- CT structures which are                        as the computational form is actually specified for
               represented by the three elements placed at the                 concepts within SCT. It is acknowledged that the
               right hand side of the figure.                                  current approach in SNOMED is not
                                                                               comprehensive due to incomplete set of canonical
                                                                               representations and possible lack of semantics to
                                                                               fully describe the meaning of existing
                                                                               semantically complex pre-coordinated concepts.
                                                                               Both the pre-coordinated form and the various
                                                                               representations of the post-coordinated concept
                                                                               are valid ways of describing the same concept.
                                                                               The first is more aligned with human
                                                                               interpretation and the second supports computer
                                                                               processing of the data. It is clear that both forms of
                                                                               concept representation are needed and both have to
                                                                               be supported by clinical terminologies such as
                                                                               SNOMED CT. The approach recommended in
                                                                               SNOMED          Essential         Terminology is
                                                                               believed to be consistent with the current SCT
                                                                               approach to canonical form definition.
               Figure 1 – Conceptual terminology model for Essential
               SNOMED.                                                         This model is highly dependent upon an
                                                                               expressive and computable syntax for post-
               DISCUSSION                                                      coordination. The process of moving to an S-ET
                                                                               distribution format will highlight any
               At the outset it is acknowledged that this                      deficiencies in the current post-coordination
               proposal is grounded in the excellent overall                   methods and constraints as these will become
               design and management features of SCT.                          explicit and subject to development. SNOMED –




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               CT authors can continue to develop pre-                      will meet the widely accepted need to continue to
               coordinated expressions if required. End users,              manage post-coordination in a modern
               particularly those who rely on the use of pre-               terminology to support the computer-human
               coordinated concepts, will have the capacity to add          interface.
               locally relevant pre-coordination through a minor
               modification of the SCT way of managing local                Making the transformation to S-ET
               extensions, and in doing so would not require                The transformation to a S N O M E D E s s e n t i a l
               frequent change submissions to the core essential            Terminology would require a set of suitable
               SNOMED terminology. As discussed earlier an                  “relationship-types” and an appropriate post-
               S-ET model, coupled with an improved model                   coordination representation form or “syntax” that
               for managing pre-coordination will support the               catered for the “pre-defined-postcoordinated
               terminology user interface.                                  equivalent concepts”. SNOMED has published a
                                                                            BNF for this syntax. This syntax describes
               One of the difficulties faced by SNOMED is the               the core SCT concepts, and their
               need to harmonize with widely used terminologies             relationships. An XML equivalent (in addition
               that are heavily structured on pre-coordination.             or as an alternative) may be helpful for the current
               LOINC and MEDCIN and most health                             computer engineering environment. This paper
               classifications would be examples {28]. A                    is not exploring the relative merits of these
               S N O M E D E s s e n t i a l Terminology would              approaches; however the process of defining
               not need to include the pre- coordinated                     the post-coordination equivalents of existing
               concepts        imported          from     such              concepts will also provide a validity check on the
               terminologies, and could instead relate                      completeness of the syntax or post coordination
               their concepts to SNOMED-CT by                               model, and as such is complementary to activities
               mapping which used the post-coordination                     of the International Health Terminology Standards
               syntax. Alternatively such pre-coordinated                   Development Organisation’s (IHTSDO) Concept
               concepts could be placed along with                          Model Special Interest Group.
               existing SCT pre-coordinated content. The
               end result would provide the flexibility of                  As the “pre-defined-post-coordinated concepts”
               incorporating or mapping to external                         could be related back to their atomic components
               terminologies, even though they may not                      (which are themselves part of the SNOMED
               share the same data models as SCT.                           hierarchy and relationship structure) it would no
                                                                            longer be necessary to separately define the
               It is recognized that there are situations where pre-        hierarchies or associations for the pre-coordinated
               coordination is more efficient from a computational          concepts within the terminology. This does not
               perspective, as in the recognition of commonly               preclude such constructs being employed, much
               used text strings in natural language processing             like current indexing activity at run-time. These
               (NLP) applications. S N O M E D E s s e n t i a l            hierarchies could be machine classified. For
               Terminology will allow the further development               example, if the phrase “fractured ankle” was
               of such concepts without undue concern about the             compiled from two concepts as follows:
               combinatorial explosion that might otherwise
               exist. NLP requires the consistent application of            [problem, action or issue] = “fracture”
               terminology and parsing of text. If a S N O M E D                    [which has FindingSite] = “ankle”
               E s s e n t i a l Terminology model is not adopted
               then it is likely that some equivalent derivative            Consequently , if it was necessary to locate
               product will be created by necessity by these key            “injuries of the lower limb”, then the hierarchical
               application areas. Having a standard form will               ancestors of “fracture” would include “injuries”
               support consistency of output of different NLP               and those of “ankle” would include “lower limb”.
               applications.
                                                                            The issue of what is and what isn’t an atomic or
               One of the current strategies to simplify                    pre-coordinated concept is subject to debate and the
               SNOMED is to restructure the relationship between            boundaries can be fuzzy. Is headache a single
               terminologies and classifications. Removing or               concept or a post-coordinated ‘pain’ with
               retiring classification concepts from SCT will allow         ‘location’ of ‘head’? Technically, it should
               them to reside in their respective                           not be part of an S-ET based on atomic
               classifications and have linkage to the clinical             concepts but is it sufficiently common and
               terminology by mapping or other formal                       semantically ‘simple’ enough to warrant
               constructs.           SNOMED            Essential            inclusion? Under our proposal, “atoms refer
               Terminology proposes making a similar change                 to semantic units, not term labels or
               to manage both the historical terminological                 compound term labels. While it is clear that
               clutter resulting from SNOMED’s antecedents and              even single concepts can have compound names, it
               use in legacy information systems. In addition it            would be a conceptual error to consider a concept




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R. Cornet, K.A. Spackman (Eds)



               such as Hodgkin’s lymphoma to be a pre-                                As a result many of the pre-coordinated concepts
               coordinated concept, whereas a “fractured right                        found in SCT diagnoses, findings and procedures
               femur” is patently so.                                                 would be excluded from the atomic- concept list
                                                                                      and be placed in the pre-coordinated group.
               Building essential SNOMED will be
               necessarily a pragmatic exercise which can cope                        It is clear that any change to the structure or
               with one or other of these forms or both. The                          representation forms of SCT may have an impact
               consequences of the fuzziness in determining                           on reference set (subset) development, use within
               whether an existing concept should be managed as                       value-sets, and mapping to classifications and use in
               a pre or post coordinated concepts are not                             local extensions. These areas need to be further
               expected to be significant. All are still included in                  examined, however S-ET would not have a
               SCT.                                                                   significant impact, as the current SCT and S-ET
                                                                                      would contain the same concepts and
               New pre-coordinated concepts could be created                          relationships. There is a significant advantage for
               (if r e q u i r e d b y i n f o r m a t i o n s y s t e m s o r        local extensions as local terminology experts could
               us er preference), although this temptation may                        map new local concepts to atomic elements within
               best be resisted as it is expected that the                            SCT, hence gaining the benefits                   of
               requirements for pre-coordination would become                         classification and relationship modelling,
               less pressing with the introduction of standard                        without having to wait for formal inclusion in
               information models (e.g., HL7 V3, archetypes or                        later releases. The development of reference sets
               OpenEHR) and the advancement of Natural                                based on concept and hierarchy selection would
               Language Processing (NLP) to support data                              also include related pre-coordinated concepts.
               entry.[26] Complex pre-coordinated concepts can
                                                                                      The feasibility of remodelling large sections of
               sometimes be useful in encouraging consistency in
                                                                                      SNOMED CT, particularly when there are
               representation where small nuances may be
                                                                                      competing priorities for terminology development,
               unintentionally instantiated where no difference in
                                                                                      must be assessed. While a conversion strategy has
               clinical meaning exists. For example: Colon
                                                                                      not been covered in detail, the re-organization could
               cancer can be represented either as: Malignant
                                                                                      consider using current SCT relationships - but with
               Neoplasm - Has finding site – Colon; or as:
                                                                                      some care because of their known limitations. The
               Colon – HasSpecimen - Malignant Neoplasm.
                                                                                      size of the term string, the number of individual
               This ambiguity is undesirable, and the
                                                                                      words, the presence of relationships, and a
               availability of pre-coordinated                       concept
                                                                                      comparison with lists of terms extracted from
               expressions at the interface level can prevent
                                                                                      medical dictionaries might help identify potential
               this type of variation, and set patterns for
                                                                                      pre-coordinated concepts. It is possible
               good practice in post- coordination within
                                                                                      that a functional result to create S-ET
               terminology services.
                                                                                      could       result    from       flagging       pre-
                                                                                      coordinated concepts and terms, without
               The atomic-concepts included in S-ET would
                                                                                      substantially altering the publication
               be those that are necessary and appropriate to build
                                                                                      structure. As with most terminology
               pre-coordinated concepts that currently exist, or
                                                                                      development, specific tools to manage the
               may be added subsequently, as well as the atomic
                                                                                      transition to S-ET would need to be developed,
               concepts currently in use. The boundaries around
                                                                                      refined and the end result would need
               atomic concept definition are often fuzzy as
                                                                                      appropriate checking and quality control
               discussed above. Editorial rules would be
                                                                                      processes and upfront attention to ongoing
               required to consider inclusion of concepts that are
                                                                                      maintenance.
               not “semantically atomic” but are very common.
               A pragmatic approach would need to be                                  While the first efforts at instantiation of the S-ET
               developed, and the following may suggest one                           model may involve the restructure of arbitrary
               strategy:                                                              twigs and branches of the SNOMED hierarchical
               1. The entries expected to be found as                                 tree, an approach proposed would be to operate on
                     defined concepts in a large medical                              concepts identified in large sub-setting exercises
                     dictionary [27]; this would likely include items                 where terminology of use has been identified from
                     that have a distinct clinical meaning and are                    analysis of actual clinical use in a specific domain
                     used frequently – e.g. Lung cancer; breast                       such as intensive care [29] or general practice .[23]
                     cancer; direct inguinal hernia; chest pain.
               2. Those concepts that cannot be adequately                                             CONCLUSION
                     defined by the composition of their post-                        This paper has proposed a modest alteration to the
                     coordinated concepts due perhaps to use of                       structure of SNOMED CT so that it supports the
                     an uncommon or unsupported semantic type                         co-existence of pre and post coordination in a form
                     for the relationship between elements.                           that advances the basic structure of what might be
                                                                                      regarded as good terminology practice [30].



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               The changes do not require any fundamental                              in Ontologies (AOW 2006), Tasmania,
               changes in SCT methods, but rather a structural                         Conferences in Research & Practice in
               extension and the incorporation of existing post-                       Information Technology, 72, pp61-68, 2006
               coordination methods of expression into the core                6.    Rector, AL, Qamar R, Marley T. Binding
               terminology.                                                            Ontologies and Coding Systems to
                                                                                       Electronic Health Records and Messages.
                                                                                       KR-MED 2006 – Biomedical Ontology in
               This paper outlines a number of issues with the                         Action. November 8, 2006, Baltimore,
               current SCT architecture and proposes a solution                        Maryland, USA
               which is consistent with its current design and                 7.    Elkin PL, Brown SH, Lincoln MJ, Hogarth M,
               which may have a number of advantages. If the                           Rector A. A formal representation for
               proposed model creates resonance with the end                           messages containing compositional
               users of SNOMED CT, it should be exposed to                             expressions. Int J Med Inform 2003 Sep;71(2-
               empirical testing and considered by the IHTSDO                          3):89-102.
               and their related organizations. The authors hope               8.    Andrews,J.E.,et al.,Comparing
               this paper stimulates discussion and feedback. We                       Heterogeneous SNOMED CT Coding of
               look forward to formal testing of these ideas for                       Clinical Research Concepts by Examining
                                                                                       Normalized Expressions. Journal of
               feasibility and acceptance.
                                                                                       Biomedical Informatics, 2008. in press.
                                                                               9.    Rector, A.L. The Interf ac e Betwee n
               ACKNOWLEDGMENTS                                                         Information, Terminology, and Inference
               This paper was inspired by an original paper authored by                Models. in Tenth World Conference on
               Don Walker with contributions from Peter MacIsaac                       Medical and Health Informatics: MedInfo-
               arising from the “GP Vocabulary Project” supported by                   2001. 2001. London.
               the Australian Department of Health and Ageing.                 10.   Dampney, C.N.G., G. Pegler, and M. Johnson.
               http://www.adelaide.edu.au/health/gp/research/current/in                Harmonising Health Information Models - A
               formatics/#vocab).                                                      Critical Analysis of Current Practice. in Ninth
               The authors would like to acknowledge the                               National Health Informatics Conference. 2001.
               contributions of Tad McKeon, anonymous KRMED                            Canberra ACT, Australia.
               reviewers, and numerous colleagues who have                     11.   Huff, S. and J. Carter. A Characterization of
               contributed in some way to this paper and our                           Terminology Models, Clinical Templates,
               education and research on terminology and informatics.                  Message Models, and Other Kinds of Clinical
                                                                                       Information Models. in AMIA Symposium.
               This work has been supported in part by grants from                     2000.
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