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				<title level="a" type="main">The NEMO Analysis Pipeline: EEG Pattern Extraction and Ontology-based Classification</title>
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							<persName><forename type="first">Gwen</forename><forename type="middle">A</forename><surname>Frishkoff</surname></persName>
							<email>gfrishkoff@gsu.edu</email>
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								<orgName type="department">Department of Psychology &amp; Neuroscience Institute</orgName>
								<orgName type="institution">Georgia State University</orgName>
								<address>
									<settlement>Atlanta</settlement>
									<region>Georgia</region>
									<country key="US">U.S.A</country>
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								<orgName type="department">NeuroInformatics Center</orgName>
								<orgName type="institution">University of Oregon</orgName>
								<address>
									<settlement>Eugene</settlement>
									<region>Oregon</region>
									<country key="US">U.S.A</country>
								</address>
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							<persName><forename type="first">Robert</forename><forename type="middle">M</forename><surname>Frank</surname></persName>
							<affiliation key="aff1">
								<orgName type="department">NeuroInformatics Center</orgName>
								<orgName type="institution">University of Oregon</orgName>
								<address>
									<settlement>Eugene</settlement>
									<region>Oregon</region>
									<country key="US">U.S.A</country>
								</address>
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						<title level="a" type="main">The NEMO Analysis Pipeline: EEG Pattern Extraction and Ontology-based Classification</title>
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<div xmlns="http://www.tei-c.org/ns/1.0"><p>In this software demonstration, we will show how formal ontologies can be used to label in-stances of neural (ERP) patterns that have been extracted from multiple datasets using a novel pipeline for pattern and metric extrac-tion (see Figure <ref type="figure">1</ref>, next page). The entire dem-onstration will last ~15 minutes. We will begin with a 5--minute introduction to ERP data from several cross--laboratory studies of word com-prehension. This overview will motivate our demonstration by showing that ERP data are complex and heterogeneous, which explains the radical challenge of making valid compari-sons across different studies within our do-main. We will then give a 2--minute description of the pipeline for analysis, which has two main components: (1) a set of pattern extraction (signal decomposition, temporal segmentation) methods; and (2) code to extract a variety of simple metrics (e.g., min and max intensity at a particular electrode) and to express these summary features as N--triples, which are sub-sequently stored in RDF. Finally, we demon-strate how the NEMO ontology can be used to reason over these data. We highlight both ex-pected and novel findings for the test datasets and note that large--scale application of this method could lead to major breakthroughs in understanding neurological patterns that are linked to sensory, motor, and cognitive pro-cesses in neurologically healthy and brain-injured children and adults.</p></div>
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<div xmlns="http://www.tei-c.org/ns/1.0" /><figure xmlns="http://www.tei-c.org/ns/1.0" xml:id="fig_0"><head>Figure 1 .</head><label>1</label><figDesc>Figure 1. [1] ERP pattern extraction. [2] Extraction of summary metrics. [3] Formatting of metrics in N-triples, with arguments defined by NEMO ontology classes and relations. [4] Capture of metadata about the experiment context (e.g., participants, measurement methods, experiment paradigm). [5] Interchange between NEMO ontology an NEMO ERP database.</figDesc><graphic coords="2,65.52,14.88,658.56,492.00" type="bitmap" /></figure>
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